FastQCFastQC Report
Sat 31 Dec 2022
SRR5844787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164768
Sequences flagged as poor quality0
Sequence length52
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT12940.7853466692561663No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC11410.6924888327830647No Hit
GTCAGCGGGCGAATGGCATACAATTAGAAGCTGAGAAAAAAGCATTCTCTGA2410.1462662652942319No Hit
GTTGAGGGGACGACTTTCAGTCCCCGACGCGCCCCGCCCAACCCCTACGATG1800.10924451349776657No Hit
AGCCACGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1760.10681685764226062No Hit
ATCCACGGGTGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAA1730.10499611575063118No Hit
AACAAAGGGCTGATGAGATGTCGCGGTAGCAAAAATAGAGAAAGGGTAGAAA1720.1043892017867547No Hit
ATAGTAGGGGGAAGCTGGGGGAGCTCGTCGCCGCCGCCGGCGGCTAGCGGGC1690.10256845989512528No Hit
TGAGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA1650.10014080403961934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)