FastQCFastQC Report
Sat 31 Dec 2022
SRR5844786.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844786.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166389
Sequences flagged as poor quality0
Sequence length52
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT12840.7716856282566755No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC11090.6665104063369574No Hit
GTCAGCGGGCGAATGGCATACAATTAGAAGCTGAGAAAAAAGCATTCTCTGA2310.1388312929340281No Hit
ATCCACGGGTGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAA1870.11238723713707037No Hit
GTTGAGGGGACGACTTTCAGTCCCCGACGCGCCCCGCCCAACCCCTACGATG1840.11058423333273233No Hit
TGAGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA1810.1087812295283943No Hit
ATAGTAGGGGGAAGCTGGGGGAGCTCGTCGCCGCCGCCGGCGGCTAGCGGGC1770.1063772244559436No Hit
GGTATCGGGTAGAAAACAAATGTTATTTGATTTCAGGTTTCACAACAAACCA1760.10577622318783092No Hit
TCAAACGGGGACACATTGCCATGGAGAAGGTGGCATCCAGAACATACCGGCT1760.10577622318783092No Hit
CATTTAGGGGCTGTTCGCCTGCGTCGCTCCGGGAGCTGCCGACGGACGGAGC1760.10577622318783092No Hit
ATTAATGGGGGCGGCGTCGCCAGGAGGAGCGCGCGGGCACAGGGTGCCGCTG1750.10517522191971826No Hit
GAAACCGGGCTGATGGAGGGAACGCACTGAAGCTGCGCTTCCCGGCCGAGGA1720.10337221811538022No Hit
TCAACTGGGACAACTGCGGGCTGCAAGCTGGGCTCCCCCCTTACTCCCCAGT1720.10337221811538022No Hit
AACAAAGGGCTGATGAGATGTCGCGGTAGCAAAAATAGAGAAAGGGTAGAAA1690.10156921431104221No Hit
AGCCACGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1690.10156921431104221No Hit
GAGTACGGGATACCCAGAGAAGGAAACTGGAACAGAGGTCTCCGGGGTCCCT1670.10036721177481683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)