FastQCFastQC Report
Sat 31 Dec 2022
SRR5844785.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844785.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159134
Sequences flagged as poor quality0
Sequence length52
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGCCGTCT12290.7723051013611171No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACTTTGCGATCTCGTATGC10690.671760905903201No Hit
GTCAGCGGGCGAATGGCATACAATTAGAAGCTGAGAAAAAAGCATTCTCTGA2270.14264707730591827No Hit
ATCCACGGGTGATGAGGCTGAAGAAAAGGAAGACAAAGAAGAAGAAAAAGAA1870.11751102844143929No Hit
TGAGTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTAA1760.11059861500370756No Hit
AACACGGGTGCTCATGTGTACACACGCTTTTCCCGTATGCTTTCTTCATGTT1640.10305780034436388No Hit
TCAACTGGGACAACTGCGGGCTGCAAGCTGGGCTCCCCCCTTACTCCCCAGT1630.1024293991227519No Hit
AGCCACGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1620.10180099790113992No Hit
AACAAAGGGCTGATGAGATGTCGCGGTAGCAAAAATAGAGAAAGGGTAGAAA1600.10054419545791599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)