FastQCFastQC Report
Sat 31 Dec 2022
SRR5844771.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844771.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184371
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC9290.5038753383124244No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT8210.4452977962911738No Hit
TCGTACGGGAGGCCATGGGCTGGCGGGAAGGCTCTGGCTTGGGACGAAAGTG2690.14590147040478166No Hit
CAGATAGGGTTTCCAAGTCAGGAGCTTGAAAGGGGTGAAAAGGAAAGGCCAC2620.14210477786636727No Hit
TTACTTGGGGAAGTCAGGATGCCATAAAAAGGAGCAAAAGAGAATGAAAAAA2610.14156239321802236No Hit
CGCTACGGGTATCAATACCTGGCAAACTGACCAGAATTACCTTCCTCATGGC2480.1345113927895385No Hit
CGCTCAGGGATGGAGGTGATTTGTCCAGGTTTCTTTTTTTTTTTTTTTTTTT2450.13288423884450373No Hit
CTGTCTGGGCACTGGATGGGAGGGCAATGAGTGTGCACATACAAATGGGGCA2420.131257084899469No Hit
CTTTAAGGGTAAAAAAATGAAAGTCAAATGGTGTCAGTTACAATTGCAAAAT2410.13071470025112408No Hit
ACGACCGGGATCATTTCCATCTTTAGTATGTTACATTTCATTAGAACTTGAG2410.13071470025112408No Hit
TTCCCTGGGACCCAGGCTGGAGTGTAGCGTGGGGTCACGGCTCACTGCAGCT2410.13071470025112408No Hit
GCTTTGGGGGACTTTTCAGAAATTAGAAAATTGTTGTGATAGATAAGGGTAA2390.12962993095443429No Hit
GTACAGGGGCCTTTTCCCACCCCCTAGCGCCGCTGGGCCTGCAGGTCTCTGT2320.12583323841601987No Hit
CGCGCAGGGGGAAGGTGGTTTATTACAAATAAGCACACTAACCCCTCGGAAG2310.12529085376767496No Hit
TAAGCCGGGGTGGAGTTTTCTGTTATATTTTGTAATTGGTTATTAGTTGTGT2310.12529085376767496No Hit
GACGAGGGTATGCATTGTTAGCTGACAAGAAAGATCAAGCACAATTAGATGT2280.12366369982264024No Hit
ACAGACGGGACTATAAACTCTTTTCTCATAAGACTTGCCAAAATTTAATTTT2270.12312131517429531No Hit
ACAACTGGGCCATGAAAACTGCACCTAATTTACCACACTTAAGATTGGCAAT2260.1225789305259504No Hit
ACGACAGGGAGCCCAGTATTGCCTTAAATAAAATCACATTTCATTTCTTGTT2250.12203654587760548No Hit
TTTGGCGGGGTGGTATGTTAACTTCTAACATTTTAAAAAATTTCTTCAGAGG2250.12203654587760548No Hit
TAATTTGGGGGGGGAGAAGGGACGAGGAGGGGCGGACAGCGGAAGGTCCGGG2240.12149416122926057No Hit
TAGCAAGGGATAGATTAAGCTTTCAGGGATTTGGAAATCTTTTTTTCTTTCT2210.11986700728422582No Hit
TGCCTAGGGCTGAGATTTAAGTCTCTCTGGCCCTAAGAGGTTTTTCCTCTTT2190.118782237987536No Hit
CATCAGGGGTGACTTCCTGCCATGATAGGTGAGGATTTAGCAAACTCACTCC2190.118782237987536No Hit
GCTAATGGGACAGAGTCTTTTGAAACAAAATTGGTTTCAAGTGAAACTTACA2190.118782237987536No Hit
CAAAATGGGTTCCCAATGGTCAAAGCTGGGATAATTTGAGCAACAAAATAAA2180.11823985333919108No Hit
GCTGGGGGTAGGAAAGGAAAACACAAAGATCGATAGAATTTTATTCTCTGGT2170.11769746869084617No Hit
GCATGAGGGGATAGATATGCTAACTAGCGTAACTGAGGTAATTTAAAGACTA2170.11769746869084617No Hit
TTACCTGGGGTCCGGTGGGCTAGGTACTGAGCGCGCGAGGTGAGGAGTTGTG2170.11769746869084617No Hit
GAACCTGGGGGCATTCCAAAGAAGACTACAACACCAAAAGGTAAAGGCCGAG2150.11661269939415636No Hit
TGGCCTGGGATGAAGGAGGGATATTAAATGGGCCCTTATTTGATCATTTTGC2150.11661269939415636No Hit
TGCTGTGGGAAATGTACCTGTGTTTAAGGAACTGCCGTGTGACTGGATTTGG2130.11552793009746652No Hit
TGTTTAGGGGTGGCCTGGTGCCTCTCCCAGCCAGCACAGGACCTGGATGAAT2130.11552793009746652No Hit
TTCTGTGGGTGCTGGTAATTTCTTTGTGTCAAAATTTTGAGACTAGATCACT2120.11498554544912161No Hit
TTAGAAGGGTTACAGGTACAAACTCACTAACACTTGATGTTATGCAGAAATA2120.11498554544912161No Hit
CATGGGGGGAGAATAAACTGACAGAAAAGCTTTTGTTGAAGTATGATTGATT2110.1144431608007767No Hit
ATGCATGGGCAAAAGAAACAAGGAATTCTAATATACCAGCAGAAGGTAGAAA2110.1144431608007767No Hit
GAAAGTGGGAAGACATCATATTTTGCCCCATAAATATGTAATTATTTGTCAA2100.11390077615243178No Hit
GTGAACGGGTAAAACATACACTAATCTACTATAAAATAAAAATTTGTCAAAA2090.11335839150408687No Hit
TTGATGGGGAGCTCCTGAGATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTG2090.11335839150408687No Hit
GTTTTGGGGTCCTACCTTGAGATGTAGCCACAGAAAAATGATCTCTCTCTCT2090.11335839150408687No Hit
GAACAACGGGGTCACCTGCGTGGTCCATTCCATAAACACCAGATTCCATTTC2090.11335839150408687No Hit
AAGATGGGGAATAACAACTGAGCCAGACCTGCACACGCCGAGGGCCCCGGGA2080.11281600685574195No Hit
TTGCATGGGCTATTCACAATTGTTTGCACTGTCAGCTCAATTAGATGCTTTT2070.11227362220739703No Hit
TTCACAGGGATTGGGGAAAGAGCTGAGCTTCTCTGGGTTTCTATTTATTTAG2070.11227362220739703No Hit
CACCGGGGCGGGGTGGCAGAAGCAGTACACTTGGTGTAACTGTATGGAAATA2060.11173123755905212No Hit
GCAGCGGGGTGAGACCCTGTCTCTTAAAAAGATAAAAAATGAGAAGATTAGC2050.11118885291070721No Hit
CGCATAGGGGGGCGGCGGTGGCGGCTGTGGCAGCGGGAGCAGCTGCGCCGCC2050.11118885291070721No Hit
GAACCAGGGCAGTAAACCTGTGATAGATAATTTATTTAACTGGAAAACCTAG2040.1106464682623623No Hit
CATACTGGGAAGTGAGAGATGGAAAGAAATAGGGACAACTCATCGAAATCAA2030.1101040836140174No Hit
AAGGCTGGGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAAT2030.1101040836140174No Hit
TATGTGGGGGGGTAAATAACAAAATTAAGGGAGAAATAAATAAGTTCTTTGA2030.1101040836140174No Hit
CTTTATGGGATTTTAAAAAAGTGATTTTTCTTGAGAGCTTTGTTATTCTTAA2030.1101040836140174No Hit
TCTGAGAGGGAGGCGTGGGGCTCTCTCCTTGTCAGTCGGCGCCGCGTGCGGG2030.1101040836140174No Hit
TCCAAAGGGATTTTTGTATGTGTTAAAAAGACTACTATATCACAATTAAAAG2020.10956169896567249No Hit
TGGCACGGGGTGCTGGGACCCGAGTAGGAGCTAGGACTAGCCAGGACCCGCA2020.10956169896567249No Hit
TTAGGTGGGATAGAGACCAAAGTAAATAGGATTATTATTGCATTGTGTAATT2020.10956169896567249No Hit
TTTTTAGGGGTCTCTAATTTCATTGATTTTCGAGGGCACATGCTTTAGTTGA2020.10956169896567249No Hit
ATTTAGGGATACCCGGACCGGGTGCCGGTGATAGTAGAAAAGGCTCCCAAAG2010.10901931431732757No Hit
TGGCACGGGATGTAAAATGAGTGAAATCTGGGTGTTGGTAGATTGTATCAAT1990.10793454502063773No Hit
TCGTACGGGTTGAGCCCAGGAATTCAAGACCAGACTGGGCAACATAGTCAGA1980.10739216037229282No Hit
TGCCATGGGATTGCCTGTCCTCTTGCACTTGTTGTTCTGCTTTATCTTACAT1980.10739216037229282No Hit
ATTGTGGGGAGGTGAGTGGAGAAGACGTCCTGGTTTCTCCAAATAACTAAGA1970.10684977572394791No Hit
CACGTGGGGGTGAATAACCTTGAATCCTTTCAAAGAGTGGAGCTTCTGAAGA1970.10684977572394791No Hit
ACATTTGGGGTTGGCCTGAACTTTAGGAAATGAGGTCGTAAGTCGAAAGAAC1970.10684977572394791No Hit
ATATGGGGGATCATAACAAATGGTTACAAAATGGCAGCATTGGACCAAGGAC1970.10684977572394791No Hit
CAAAAAGGGATTTAGGAAAGACTAAGCAACCAAATAGCAAAGATCCCTCAGG1970.10684977572394791No Hit
TTGACAGGAACCAAAATAAACAAAGCAAGACAAATTAAAAATATGTGGGGGA1960.106307391075603No Hit
GCCAGAGGGATCTGATTACATGATCTCTGATTTAAACAAACAAAACACTTAT1950.10576500642725808No Hit
AGAAATGGGGTTACTTGACTATTAGAAAATTCATTGTATATTTAAAAAGCGA1950.10576500642725808No Hit
TATGTCGGGAGGTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAAT1950.10576500642725808No Hit
AAACACGGGGTATTTATTATTGTACATGCATAACCAGGGTGGTGAGAGCACT1950.10576500642725808No Hit
TCCACAGGGGGAGCACCTCTGCCCGGCCACCCCGTCTGGGAAGTGAGGAGCG1950.10576500642725808No Hit
AAACAGGGGGAGCGTGGAGTAATCCTTAGAGAGATGCAGGAAGTTGAAACCA1950.10576500642725808No Hit
GGGCATGGGGCACCTTTCTGGAATTATTTTGCCAAAATATTTAACCTGAATC1950.10576500642725808No Hit
TCTAGGGGATCAGTGGAAATCCAGCGAGATATTAGAAATAAAGGCCAGAAAA1940.10522262177891316No Hit
GAATAGGGGGCCAGGTGATTAAGTACGTGCTCCAGGATCCCATTTGGCTGCT1930.10468023713056825No Hit
AAAAGGGGGACATACCCATGGCCAACCTCCTACTCCTCATTGTACCCATTCT1930.10468023713056825No Hit
CGTTGGGGGTAAATGGACTTGTGTTCAAATTATTTCTTCAATTGTCATAGAT1910.10359546783387844No Hit
AGCGCAGGGATGAAAGAAGAATAATAATGTGACATACCAATTGTTTATTATG1910.10359546783387844No Hit
TACCAGGGTAATTTATGTTTAATACAAAAGGATGATTTAATGGTATCACCAA1910.10359546783387844No Hit
ACAGTAGGGCGATCTTATACTGGGATTAACAGACAATGGGAAAACTAGCTCA1910.10359546783387844No Hit
ACAGTGGGGAGTGTATATTGTTTGAGGTATAAACATGATTATAATGTACAAA1910.10359546783387844No Hit
CACCTAGGGATGGAAGGAGGGTAGGGAAGTTACGAATTACTCCTTCCAATAG1910.10359546783387844No Hit
CAGTCCGGGAGAGTGGTTTTGGAAACCAAGTAAAACACTTGATAATGTAGTT1910.10359546783387844No Hit
CTACACGGGGAATGAAGCAAAGCAATTTTCCAGGAGCATTTCAGGTCAGTGA1900.10305308318553352No Hit
GGTATAGGGCAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAAC1900.10305308318553352No Hit
TAGCGTGGGGTCCAATTGTATACCTAGAATACTTACTTAAAACTTAGTTTAC1900.10305308318553352No Hit
GGTCAGGGGATAAGTAGGTTGGAAAATACTTCTGGGTTTTGCTTTCTTAAGT1890.10251069853718861No Hit
GACTTAGGGGTCTCTCGTGGAAGAAAAGCAGCAGAAATTGCTGTTGGCTGTG1890.10251069853718861No Hit
CAAGCAGGAAGTGAAATTGTCCCTGTTTGCAGATGACATGATTGTATATATA1890.10251069853718861No Hit
AATGATGGGCCTCCTTTAAGATGAGTTCCTTTCCCCAAAGTGACTTTCCTTC1890.10251069853718861No Hit
ACCTCCGGGTATTAAAATGCATTTAATTATAATAAAACATTTAACACAAGTA1880.1019683138888437No Hit
GCGAAGGGGGGCCTGTTTCATACTAAACAGTAATGTTGGTTGAATGAGTAAA1870.10142592924049879No Hit
AAGCGCAGGGATTCAGCCATTTCCATTTGTCATTTGTTTCAACCTTTTTTAA1870.10142592924049879No Hit
TTCACGGGGGTTTATGTAATGTCTGGAGTCTGGTCCTGACAAGGTTTTGTAA1870.10142592924049879No Hit
AATTATGGGACAAGAAGACATACTGAAATTTCCTTAAGAGCAGGGCTCTCAT1870.10142592924049879No Hit
AACAACGGGGTGACTTTTCTTGTGGGAATGTGTTGTATTTTCTTGGTTCTTC1870.10142592924049879No Hit
GGTCGCGGGATCTATCCAAGAGGGACAAAGCTTCCATACAGCAGCCAATATT1870.10142592924049879No Hit
ACGCAGGGTGTTCATAAAGAGTTTCAACAGCAGACTCAATCAAGCAGATTTA1860.10088354459215386No Hit
CAATATAGGGCTAAGAATTCAGAAGAGTAACCCTTTGTCAGAAACATCAAAG1860.10088354459215386No Hit
ATAATAGGGCCACAGGGAGAATGAAGCCCTGGTTCTGAAGGGCGCAAAGAAT1860.10088354459215386No Hit
GCAGTTGGGCACACTGAACATGGTAAAAGGAACCCAGGTTCTGAAATAGGCT1860.10088354459215386No Hit
TCGCATGGGGGGAGAAGGATCGGGGCCCTCGCCGCTCTGTCTCATTCCCTCG1850.10034115994380895No Hit
TGCGCTGGGCTAGGAACTGTGTTGGAACTCTTTAAAATAAAGAAAAGAGGAG1850.10034115994380895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)