FastQCFastQC Report
Sat 31 Dec 2022
SRR5844766.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844766.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163936
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT4920.3001171188756588No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC4360.26595744680851063No Hit
CAGATAGGGTAAACTCAAATCCAAAAATATACAATGCATACACAAAAAGTAG2710.16530841303923482No Hit
CACATTGGGGGATCACTACCGCTACTGAGAGCCAGGTCTGCGTTTCACCCTC2000.12199882881124341No Hit
ATCAAAGGGGGAAGTTATCAGAAGAAACATAGTGGCATAAAAACTGTGCAAG1970.12016884637907475No Hit
ATTGCGGGGCCAGGCTCCGTTGTAGGGGTTACAGAACAGTCGTTCCCGCCTC1960.11955885223501855No Hit
GTGCTGGGGGAATAAAGCAAAAATATTAACATAAAATGACTGAGTTACTGGA1930.1177288698028499No Hit
GTACATGGGATGCTTTATAAATGAATTTGATGAATGGCAGTTTTTATATTTT1930.1177288698028499No Hit
TTGCTAGGGGTATGCTTTTCAAATGCTATCTGCCGTGAATTTTTTGCTTTTA1910.11650888151473746No Hit
GCTCGGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1910.11650888151473746No Hit
AGCCAAGGGCATCCCTTGTGATATCATGGGCCACTTTTAGTCTTTTATTTGG1910.11650888151473746No Hit
GCTGGGGTGGAAGCTACCTCTGCAGCATTCCTGGTATTCCTTGAAAATCTCC1910.11650888151473746No Hit
TTTGAGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1900.11589888737068123No Hit
GGGCTTGGGATTCAAGAATGATAACAGTCTCATTGAATTTGGGCCCACTCTA1850.11284891665040017No Hit
GCTAAAGGGGTGTCTACTTAGCTCGCATTTCTCAGTGTTTGTCAGTTTCTCT1850.11284891665040017No Hit
TTCTAAGGGGTTTCTTAAGATTTTGAGTAGGGCCTCTTCTCATGCTGCATAG1850.11284891665040017No Hit
TAAAACCCCAGCTAAAATCAGAAAGCTCTACCTCTGCATTCTCTACACCTAC1850.11284891665040017No Hit
CAGGTGGGGGCCTCGCGGATGGCGGCGCAGGGCGTAGGGCCTGGGCCGGGGT1840.11223892250634393No Hit
CAAACAGGGGATCTTTACCAGGGTGGAAAACAGAATAAAAACAAACTTGGTA1840.11223892250634393No Hit
CTCATAGGGGGAGGAGGAATAGGAAGTATCAAAGTCAGGATAAGGTGTTACA1840.11223892250634393No Hit
AAAGTAGGGAGGCGGAGGGGAACCAGCAGCTTTGGACGTTATTGATTGTCTG1830.11162892836228773No Hit
TAGCTTGGGATTCAGGTAAAACAATGAATGAGCCACCTTAGCAGGAGCAGAT1820.1110189342182315No Hit
CATTACGGGATTGAAAGTTATGTTTCTTTGTTTACTTCATTTTTTCCTCTAA1820.1110189342182315No Hit
CCACAAGGGATTCACTAATGACAAATTCCAGGTCAGCACAAATAAATTGACG1810.11040894007417529No Hit
CAGCATGGGATTGCTCACCATTTTATCTATATAACTTTGGATTTTGGTGTCC1800.10979894593011907No Hit
CTCAGCGGGGCGGGCTGTGTGCAGGAAACATGAACTTATGCAGTATGACTTG1800.10979894593011907No Hit
TAGCCGGGCAACTGGAAGAGGGTCCTAGCAGTCAATCCGGGCCTTGGGCACA1800.10979894593011907No Hit
GCAAACGGGAGTAACCATACATGAATAATCTAAAATAAAATAATGACAAACG1790.10918895178606285No Hit
AGCGTGGGAAAGTACAATTTCAAAGGTCATTACCAACAGCAGGGTTTTTTTT1790.10918895178606285No Hit
TAGATAGGGGAGCCCGAAGCACCTGACATGAGGGCGGGGACCCCGAAATGCA1770.10796896349795043No Hit
CGGTTCGGGGAAAATAACATTTTTGTTTTTCTCAGCTTCCAAAGCAGTTCGT1770.10796896349795043No Hit
GCTTTTGGGGAAGACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGT1770.10796896349795043No Hit
CAACAACGGATGCCCAGTGTGGATAAAATGTCACATTTCTGTAACTTTTGAC1760.1073589693538942No Hit
TTAGCAGGGTCAACCTTTCTCCCTTCTCAAAATGCTTGCCTCATAATGCATA1760.1073589693538942No Hit
GTTGTCGGGGGGAATGATTTTGAATATACAGCAAAAATTCGGACCCTAGCTG1760.1073589693538942No Hit
GCGGCCGGGGCAAATTTAAAATGATTGACTTTTATTTTGCAGTTAGCAAATA1760.1073589693538942No Hit
TGCTTGGGGCTGGTCTTCTCGACTTTTCTCTTAATACTTCCTTTCTTGCTGT1760.1073589693538942No Hit
GATAGCGGGATCCCCATTTTGCATACCAGAAACTGAGACTTACACATATCAA1760.1073589693538942No Hit
GAGACGGGAGTCTCCCTCCGAGAGGAGGCCAGAGGGAGAGGAGGATCTCAGC1750.10674897520983799No Hit
GACACCGGGATTCAGCCTCAGTAGTAGCGAACTGCACTGCTGTTTGGTTTGG1750.10674897520983799No Hit
AGGCATGGGAGATGTCTCTGGGAAAACTGCTTTAAATCAAGCTATATTGCAA1750.10674897520983799No Hit
CTGCTTGGGACGACCAGTGAAATCCAGCATCTTTCAAGTGTTTATTGGCCCT1750.10674897520983799No Hit
TGGCCTGGGGAACGTGGGCCCTCATCTCAGATCTGCCCCCAGTATGTTTAGG1740.10613898106578176No Hit
GCTTTTTTGGTTTCCACATTTAAGTGAGAATGTGCAATAGTTGTCTTTCAGG1740.10613898106578176No Hit
TCATTTGGGTGGAGCAAGGAAAAGAGCCCTGGATGGTGAAGAAGGAGGGAAC1740.10613898106578176No Hit
GGTTCTGGGCCGGCAGAGATGGGGTTTATGTATGTTCAGCCAGATAGTAAAT1740.10613898106578176No Hit
GTTCCCCAAAGCGGCAGAGCTGTACGAGCGCGTGGCCTCCAACCGTGAGCAC1740.10613898106578176No Hit
AGTCCAGGGAAGGTGAGGACAATAAAATGCTATCTCTTAGCAATTGATTAGT1720.10491899277766935No Hit
TTTCATGGGGTTGACAACTGAAGTTGTCTGTCAGAAAGCAATGTTGTAAGGT1720.10491899277766935No Hit
AAACTGGGAGAGGGGAAAAGATGGCTCCCCTACAAAGCATCAGAAATGAGTT1700.1036990044895569No Hit
CCACATGGGATTGAGTACAGAGCTCACATCACAAACATTTAACCATTTTCGT1700.1036990044895569No Hit
TACCAGGGAGAGATGTGGCTCTGCAGATCCACTTCACCCTGATCCAGGCGTT1700.1036990044895569No Hit
AAGCTGGGGACTCTTGAGGTAGAACAGTGAACAATTACTCAAAAATCAGAAA1700.1036990044895569No Hit
TTCCCTGGGGAAATGTCACCTTCTCAGGGAATGATCTTCCCTCCCACTTCTG1700.1036990044895569No Hit
ATTGTTGGGCAGGATGGGGAGTCGCTCCAGATGTTCCAGGCCCTGAAAAGAC1690.10308901034550068No Hit
AATAACGGGATTAAGGTATATTCCATCTATACCTAATTTGTTGAGAGTTGTT1690.10308901034550068No Hit
CACTGCGGGGATGTGCATCCTTGTCAGCACTTGATATTGTCAGTTTTTAAAT1690.10308901034550068No Hit
TAGCCAAGGGGAAGTGAGCGGCGGGGTCGACTGACGGTAACGGGGCAGAGAG1680.10247901620144446No Hit
CAGCCTGGGCAACAGAGCAAGATTGTCTCAAAAAGAAAAACAGTATTGATAA1680.10247901620144446No Hit
TTCCGGGAGTAGAATAATGTAAATGTCAGAACCTCCTGGGTTGTGTTTATCT1680.10247901620144446No Hit
TTTAAGGGGACTGCTTGAGCAATCTGAATGGCTAGTTTTGAATCTGGCTTCT1680.10247901620144446No Hit
TAAGGCGGGGTACTGACTCCCTGTGCAGACAGAATTCTGTGCATAACTTTTG1680.10247901620144446No Hit
CGTATGGGGGAATAGTTTTTGAACTTCTGAAGAAATAAAAGTTAAGCTGGTG1670.10186902205738825No Hit
GTAAGGGGAACACTAGAAGGCAATCAGATTTTTAACAACCGGTTTGGAGGCT1670.10186902205738825No Hit
AAAAGGGCTTTGGAAAAAAACAACTTTTAGTTTCACTGATATTTTTCCATTG1670.10186902205738825No Hit
GAGAATGGGCAATTTAGAAATACCTACTTCTAAATAAATATTTGTAATGTGC1670.10186902205738825No Hit
TACTTAGGGCGATCTTGTTGGTGGGTGGTAATCCATAGGCAGCATTGATATT1660.10125902791333202No Hit
CCGGGTGGGGTTACAGATTAGTCTTAAAGAATTGCATTAACTTAAAAAAAAT1660.10125902791333202No Hit
ACACATGGGAATCAATTTTATACATAAGAATAGCTTCAGCTTCCTTAGAAAT1660.10125902791333202No Hit
AGATTAGGGCAGGTGGCCAGATACCGCCCACGTGCCCCCATCATTGCTGTGA1650.10064903376927582No Hit
AAGATGGGGTAATCGATGAGATGTCTCGATCTAAGGCATCTTAGCACCAATA1650.10064903376927582No Hit
TCAGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1650.10064903376927582No Hit
TTTTGAGGGAAGACCTATATTCTCTGTAGTTACTGAAAACCGAAAGTCAATT1650.10064903376927582No Hit
TTGAATGGGAGCTCAGGATCCTCCAGCAGCTCAAACTCCAGACCCCAGCTGA1640.10003903962521961No Hit
ATGTTAGGGAAGCAAATACAGTTGTTTTAAAAGCAAGAGGTTCAACTGTATT1640.10003903962521961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)