FastQCFastQC Report
Sat 31 Dec 2022
SRR5844765.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844765.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164965
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC4950.3000636498651229No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT4950.3000636498651229No Hit
CAGATAGGGTAAACTCAAATCCAAAAATATACAATGCATACACAAAAAGTAG2560.15518443306155852No Hit
ATCAAAGGGGGAAGTTATCAGAAGAAACATAGTGGCATAAAAACTGTGCAAG2390.1448792168035644No Hit
GACACCGGGATTCAGCCTCAGTAGTAGCGAACTGCACTGCTGTTTGGTTTGG2240.1357863789288637No Hit
CAGGTGGGGGCCTCGCGGATGGCGGCGCAGGGCGTAGGGCCTGGGCCGGGGT2210.13396781135392358No Hit
GCTAAAGGGGTGTCTACTTAGCTCGCATTTCTCAGTGTTTGTCAGTTTCTCT2180.1321492437789834No Hit
GGGCTTGGGATTCAAGAATGATAACAGTCTCATTGAATTTGGGCCCACTCTA2050.12426878428757615No Hit
AAAAGGGCTTTGGAAAAAAACAACTTTTAGTTTCACTGATATTTTTCCATTG2040.12366259509592945No Hit
GGTTCTGGGCCGGCAGAGATGGGGTTTATGTATGTTCAGCCAGATAGTAAAT2010.1218440275209893No Hit
CGGTTCGGGGAAAATAACATTTTTGTTTTTCTCAGCTTCCAAAGCAGTTCGT1990.12063164913769586No Hit
TAGCTTGGGATTCAGGTAAAACAATGAATGAGCCACCTTAGCAGGAGCAGAT1980.12002545994604917No Hit
GCTGGGGTGGAAGCTACCTCTGCAGCATTCCTGGTATTCCTTGAAAATCTCC1970.11941927075440244No Hit
CCGGGTGGGGTTACAGATTAGTCTTAAAGAATTGCATTAACTTAAAAAAAAT1960.11881308156275573No Hit
GCTCGGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1940.11760070317946231No Hit
CACATTGGGGGATCACTACCGCTACTGAGAGCCAGGTCTGCGTTTCACCCTC1930.1169945139878156No Hit
TAGCCAAGGGGAAGTGAGCGGCGGGGTCGACTGACGGTAACGGGGCAGAGAG1920.11638832479616888No Hit
TAGATAGGGGAGCCCGAAGCACCTGACATGAGGGCGGGGACCCCGAAATGCA1920.11638832479616888No Hit
AAGATGGGGTAATCGATGAGATGTCTCGATCTAAGGCATCTTAGCACCAATA1910.11578213560452218No Hit
AGCGTGGGAAAGTACAATTTCAAAGGTCATTACCAACAGCAGGGTTTTTTTT1910.11578213560452218No Hit
TGCGCCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1890.11456975722122875No Hit
AAAGTAGGGAGGCGGAGGGGAACCAGCAGCTTTGGACGTTATTGATTGTCTG1860.11275118964628861No Hit
GTGCTGGGGGAATAAAGCAAAAATATTAACATAAAATGACTGAGTTACTGGA1860.11275118964628861No Hit
TTCCGGGAGTAGAATAATGTAAATGTCAGAACCTCCTGGGTTGTGTTTATCT1840.11153881126299517No Hit
TCGTTAGGGGTTCAGATTGGCAGTCTCTTTCGCTTATCTGCTGTTTTAAAGA1830.11093262207134846No Hit
AGCCAAGGGCATCCCTTGTGATATCATGGGCCACTTTTAGTCTTTTATTTGG1820.11032643287970174No Hit
GCTTAGGGGTTGCCTTAAAGAAAGTCGAATTAATAGCTTTTATTGTATAAAC1820.11032643287970174No Hit
TAAGCCGGGTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACCGATCTTGC1820.11032643287970174No Hit
CCACAAGGGATTCACTAATGACAAATTCCAGGTCAGCACAAATAAATTGACG1820.11032643287970174No Hit
ACTAATGGGCTGGAATACCAATACATTCTACAAAGCATTCAGTTGATTTTCC1820.11032643287970174No Hit
AGATTAGGGCAGGTGGCCAGATACCGCCCACGTGCCCCCATCATTGCTGTGA1810.10972024368805504No Hit
TAGTTAGGGCATACAACTACAGAAATTTTCACATATCTTCTTTTCCCAAAAA1810.10972024368805504No Hit
CCTGTAGGGTTCCTGAATGAAATGATTGTGGTATGAAGTTATAAGAAATAAT1810.10972024368805504No Hit
GTTGTCGGGGGGAATGATTTTGAATATACAGCAAAAATTCGGACCCTAGCTG1800.10911405449640832No Hit
TAGCCGGGCAACTGGAAGAGGGTCCTAGCAGTCAATCCGGGCCTTGGGCACA1800.10911405449640832No Hit
GTTCCCCAAAGCGGCAGAGCTGTACGAGCGCGTGGCCTCCAACCGTGAGCAC1800.10911405449640832No Hit
TGCCGGGGGGTGCCGGAGTCGGGTGGGTTGGCGGCTATAAAGCTGGTGGCGA1790.10850786530476161No Hit
AATAGCGGGTGACAATCAGGTGCTAATGATTGTATACTATTAAAACCAGCAC1790.10850786530476161No Hit
ACACATGGGAATCAATTTTATACATAAGAATAGCTTCAGCTTCCTTAGAAAT1790.10850786530476161No Hit
CCTTGCGGGAGCATGGCGGCGGGGGCGGCTGAGGCAGCTGTAGCGGCCGTGG1790.10850786530476161No Hit
TACTCTGGGATATTTCTTCTTTTAAAAATTTTTTTTGTAGATATAGGGTCTT1780.10790167611311491No Hit
GCAAACGGGAGTAACCATACATGAATAATCTAAAATAAAATAATGACAAACG1780.10790167611311491No Hit
CTGCTTGGGACGACCAGTGAAATCCAGCATCTTTCAAGTGTTTATTGGCCCT1780.10790167611311491No Hit
GTACATGGGATGCTTTATAAATGAATTTGATGAATGGCAGTTTTTATATTTT1760.10668929772982148No Hit
GCATATGGGTAAGTGGAAAAGGATCACTATTATGAATCATAGGTGTTACATA1760.10668929772982148No Hit
TCAGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1760.10668929772982148No Hit
AAGCTGGGGACTCTTGAGGTAGAACAGTGAACAATTACTCAAAAATCAGAAA1760.10668929772982148No Hit
TTTGAGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAACA1750.10608310853817476No Hit
CTGTCTAGAACTGTCAAAACAGCCTCAGGCAGGTTCTTCAGGAGCTATTCTA1750.10608310853817476No Hit
TGTAGCGGGGAAGATCAGAGCAGAACTAAATGAAATTGAAACAAACAAAAAC1750.10608310853817476No Hit
CTTTCTGGGAGTGCAAACCACCATTGGAATCTAGCCAGAAATGTCTGTCAGA1750.10608310853817476No Hit
AAGCTTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1750.10608310853817476No Hit
AGATGGGGGATTTACTAAGTGTCACATTTCTCTAAGATGAAAGATTTTTACT1740.10547691934652806No Hit
CAAACAGGGGATCTTTACCAGGGTGGAAAACAGAATAAAAACAAACTTGGTA1740.10547691934652806No Hit
CACGCAGGGTGAGGTACTGCAGAGTGGAGATGACATCCTCCTTCTTGATGCT1730.10487073015488134No Hit
AGCGCAGGGGAGTAAAAAAATTTTACAAAATTAAAAATGTTTAAAGTTAAAA1730.10487073015488134No Hit
GGTCGCGGATGACAAAGATTCTCTGAGTGAAGTTAACACCACGTATTTTACC1730.10487073015488134No Hit
CAAGAGGGGTAGGAGCTAAGACACATTTTCTCCTGACTGACCATGGGTCCAA1730.10487073015488134No Hit
CAAAACGGGACCGCAGATAAGTTTTTTTCTCTTTGAAAGATAGAGATTAATA1720.10426454096323463No Hit
TGCTTGGGGCTGGTCTTCTCGACTTTTCTCTTAATACTTCCTTTCTTGCTGT1720.10426454096323463No Hit
TTTCATGGGGTTGACAACTGAAGTTGTCTGTCAGAAAGCAATGTTGTAAGGT1720.10426454096323463No Hit
CACTGCGGGGATGTGCATCCTTGTCAGCACTTGATATTGTCAGTTTTTAAAT1710.1036583517715879No Hit
TTCTAAGGGGTTTCTTAAGATTTTGAGTAGGGCCTCTTCTCATGCTGCATAG1710.1036583517715879No Hit
GTCATAGGGGAGGTTTCGTCTTCCCGGAAGCGTTGGAGGACATTCCCTGTTG1710.1036583517715879No Hit
CTCATAGGGGGAGGAGGAATAGGAAGTATCAAAGTCAGGATAAGGTGTTACA1710.1036583517715879No Hit
TGGCCTGGGGAACGTGGGCCCTCATCTCAGATCTGCCCCCAGTATGTTTAGG1700.10305216257994121No Hit
TAGCTAGGGAGCTCCCCGAGTCAGCCTATATGCACCAGCTCTTGGGCCTCAA1700.10305216257994121No Hit
GCGGCCGGGGCAAATTTAAAATGATTGACTTTTATTTTGCAGTTAGCAAATA1700.10305216257994121No Hit
CCACATGGGATTGAGTACAGAGCTCACATCACAAACATTTAACCATTTTCGT1700.10305216257994121No Hit
AGGCATGGGAGATGTCTCTGGGAAAACTGCTTTAAATCAAGCTATATTGCAA1700.10305216257994121No Hit
GAGACGGGAGTCTCCCTCCGAGAGGAGGCCAGAGGGAGAGGAGGATCTCAGC1690.10244597338829448No Hit
TTCCCTGGGGAAATGTCACCTTCTCAGGGAATGATCTTCCCTCCCACTTCTG1690.10244597338829448No Hit
TCAGCAGGGAATCTAAGCATGAGGAAGCCATCGGTCAGGTCCTCAACGGAGG1680.10183978419664777No Hit
TACATAGGGTAATTAAGAATTGTTATTTTTAATTTTAGTTATTTTTCAGGAG1680.10183978419664777No Hit
AAGCACGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1660.10062740581335435No Hit
GACTAAGGGACAGTAGATGTTCAGTAAAAAATACCTTCTTCTTTACCCATGA1660.10062740581335435No Hit
ATTGCGGGGCCAGGCTCCGTTGTAGGGGTTACAGAACAGTCGTTCCCGCCTC1660.10062740581335435No Hit
TTGCTAGGGGTATGCTTTTCAAATGCTATCTGCCGTGAATTTTTTGCTTTTA1650.10002121662170764No Hit
AGTCCAGGGAAGGTGAGGACAATAAAATGCTATCTCTTAGCAATTGATTAGT1650.10002121662170764No Hit
TACCAGGGAGAGATGTGGCTCTGCAGATCCACTTCACCCTGATCCAGGCGTT1650.10002121662170764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)