FastQCFastQC Report
Sat 31 Dec 2022
SRR5844760.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844760.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145903
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT9610.6586567788188042No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC6870.4708607773657841No Hit
ACATTAGGGGCATCTCCTCGACGATCAAGATCTATCTCTCTTCGTAGATCAA1810.124055022857652No Hit
TAAACCGGGCATTGTAAATATTGGTATTTTGAATGTTAAATGTCAAACAAAT1810.124055022857652No Hit
GGTGTAGGGGAAGGAGGCAGAAGGGAGAGTGATGCACGATGGGCAAGGACTT1800.12336963599103513No Hit
TGTCTTGGGAGGCACAGCTCCTCAGTCTTCTCACACAGTCCTGCCGGTGGCC1800.12336963599103513No Hit
GCAGCTGGGATTCTGCTGATTCTTTATCTTGAGTAGGTGAAACTGTTATCTT1800.12336963599103513No Hit
GTGATGGGTGGCTCTACAGGAAGAGAAGCACCAGCTTTTCCTGCAGCTCAAG1780.1219988622578014No Hit
CGAGATGGGGCCAGTTTCCTCATAAGTAAATTTAAATACTGTCTATTTCTAA1760.1206280885245677No Hit
GCAAGCTGGGCTCCCCCCTTACTCCCCAGTGTTCAAATCCTGGATTCACTGC1730.1185719279247171No Hit
CATCAGGGGGATTGAACCTAGTAAGATAGTCTGCCCCTTTGTCCTAGTACAT1730.1185719279247171No Hit
CTATTTGGGATTGGAAGATTTACAAAAGAAAAAAAATGACCTTCGGTATATT1730.1185719279247171No Hit
TTCCATGGGACCAGACAGTTTGACATCCTCCACCCTTAGAAAATGACTGACA1720.11788654105810024No Hit
AAACGACGGGTATCGGAAAGAGAGCCATTTCTTAGGGGAATAAAACAGTTTC1720.11788654105810024No Hit
ATAAGCGGGCGATCTGCATTTGGGCCTAACACATGAGGACTCATATAAACTT1720.11788654105810024No Hit
TCTTAGGGGAAGATCACAATCACCAATGACCAGAATCGCCTGACACCTGAAG1720.11788654105810024No Hit
TGCGACGGGAGATGAAATGATGAGATGAAATGAAATGATGAGATGAGATGAA1710.11720115419148339No Hit
CGATCAGGAGACTGCGACAATGATAACAAACTAGGCATTGGACATATTTTTA1700.11651576732486651No Hit
GGTCATGGGGGGGACTCCTTGGGAATCTGTCACCTTCACGGCCCTGGGCACT1700.11651576732486651No Hit
AATAATGGGAGTTGACTGCTGAGAAAAGGACAATGAAATGATAGCAATTTCC1690.11583038045824966No Hit
GTTGCCGGGGACACGTGGTCTTGGAGACGCAACAAGCAGGGCCGCGGACCAG1680.11514499359163279No Hit
CGATATGGGAGCAGCTGACAGGTCTGATCCCCAGTGACCACGCCCCTCTGGC1670.11445960672501593No Hit
CGTTAGGGGGTTTGATGTAGTCCCAATTGTTTATTTTTGTTTCTGTTGCTCA1670.11445960672501593No Hit
AATTCGGGAAGAGCAAGGAGTTCTTGCAGATCAACAGCCTGGGGAAACTGCC1650.1130888329917822No Hit
AATTATAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1650.1130888329917822No Hit
TGAGCAGGGATTTCTTTGTATTTCTCTGTTAAGCAAAGAAATATTAAGGAAC1640.11240344612516535No Hit
ATACGTGGGCAATATAATCCAGGGTCATTCTATTTTGTGCTAGAAATTAGTG1640.11240344612516535No Hit
CAGTAGTGGGTCCCTGGTGTGATTCCGTCCTGCGCGGTTGTTCTCTGGAGCA1640.11240344612516535No Hit
TTACTGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1630.1117180592585485No Hit
ATAACCGGGGGTTGCCCATTTTTATGGTTACTTCTTTGTAATATGCTAAACA1630.1117180592585485No Hit
GCTGCCGGGGTTGATCTCATATTCATTTTTAGTTCTGAGAAAAACTCATAGT1630.1117180592585485No Hit
AATAGAGGGAACTTTAAACTTGTCAAAAAGTGTCTAAAATGCATAAAATGTT1610.11034728552531477No Hit
GAGCAGGGGGAGAATTGAAATTTATCTTTCAGTTTGCAAAGTTCCTGTACCC1610.11034728552531477No Hit
ACTAATGGGGAAAAAATTGCATCAAGAAGTCAGAATATAATTGAAATCAACA1610.11034728552531477No Hit
GGTACTGGCTAGGACAGTTAACTTTTCTTCCTCGCTTAAGAAATTGCTTTAG1600.1096618986586979No Hit
CTCTGCCGGGAAGGAAAATCACTTTATAAAATAAAACCAAGACATGACTCTG1580.1082911249254642No Hit
GCACTAGGGGATGGATGAAATTTTGGCTATTCTTGTTAACAGTGTCTCAGTG1580.1082911249254642No Hit
CGTGTGGGGCAAGCCTCCTCCTGCTATTTCCTTTCTCTTTGGAGAACTTCCT1580.1082911249254642No Hit
CGCCATGGGAGAATTATAACAATCTGCTGTGTCAACGGAATCTAAATTAGCA1570.10760573805884731No Hit
ATAGTTGGGGCTTGTGCTAATGAAGGAATTACAAATGAAACATCAAGATTTT1570.10760573805884731No Hit
TAGTTAGGGCACTGGCTTTGCACAGAAGTATGCTCTACTTGCGTTGCTTTAG1550.10623496432561358No Hit
TACCACGGGGATCGTCTGTGAGTGCCTTCATGAATTCTTAAAGTGAAAAACA1540.10554957745899674No Hit
TGGATTGGGAAGGCCACTCCAAGACCACACTGGCAGTTGTGTGGTGAACAAT1540.10554957745899674No Hit
AGTATAGGGGACAAGCAGTTGGATGAAAGAGAACACACAATTGAAGAATGGA1540.10554957745899674No Hit
CCACCAGGGATATAAATTTTTTCATTGAAGACTGGTAAGAGAAGTTATGTAA1530.10486419059237988No Hit
GCAGCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1530.10486419059237988No Hit
TTGCACGGGAGTTCTTTATATATTTTAGATATAACTCCCTTATCAGATGTAT1530.10486419059237988No Hit
CTCCAACAGGGGAACCTGCACTTCTCTAAAAAATAAAATTAGTTAAAATTAA1530.10486419059237988No Hit
TATCACGGGATGGGCATCCTGAGCGGCAGCGTGGACGCCATGGTCCAGGCTC1520.104178803725763No Hit
GTATTTGGGGGACTTACATGATATCATCAAGTAAACCAGCATGTGCCTTAGA1520.104178803725763No Hit
TTAGCGGGGGTTTTCATTTTTATCAGATTTTGCTTTACATCTTTTAAAGCTC1510.10349341685914615No Hit
GATGGTGGGGGATGGAAGGACAATATCTCACTATCTCACCTTTAGAGATGTT1500.10280802999252928No Hit
AAGACAGGGATGCCAAGAGCTCTAAACAGAAGTTTGAGAAGGTAAAAATTAA1500.10280802999252928No Hit
TTTATCGGGTTCCTTACAACTATTTTATTCTAAGGACAGCTTTCCTTTCTGA1500.10280802999252928No Hit
CATCTTGGGGGCAGCCTCAGTCTCTCCGCAGCCGCGCGGCCACTGCGAGCCC1500.10280802999252928No Hit
ATGAGGGGCTGCAGAGAAATTAGACCAAATGAAACCTGCTGGAATAGGTTTG1490.10212264312591242No Hit
TTACTAGGGTCCCCACTTTCCAGCCGTTCCAGAGGAGCATATCTGCTGATGA1490.10212264312591242No Hit
ACGCACGGGGGAGATCATCGAGGCTATCTACAAAATGGTAGGCACTGTGATC1490.10212264312591242No Hit
GAGTATGGGATTTGACCCTGATCTCAAAGCATTACTATTCTTATTAAGAATT1490.10212264312591242No Hit
GTCAATGGGAGTTCTGAAATTATTGAAAGCCTATATTAAAAAAAGAAATTTA1480.10143725625929556No Hit
ACTCGGGGGAGACAGATGCGAGGCGGCGGTCAGCAGGTGCCGAACCCACGGC1480.10143725625929556No Hit
TATAAAGGGTGAGCGCGCGAGGTGAGGAGTTGTGCAGGGTATGGGGAAAGGA1470.10075186939267869No Hit
TTTTATGGGATGGCTTCCTAAATGTCACCTGCCCATGCTGCTGCAGCTGAGC1470.10075186939267869No Hit
CATGTTGGGGAGACGTTCTTCGCCGAGAGTCGTCGGGGTTTCCTGCTTCAAC1470.10075186939267869No Hit
ACAAGTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1470.10075186939267869No Hit
ACTTCAGGGGCCTGCTTGCTTTCTGGGGACACTAGCCCTCATTTCCCTTCTG1470.10075186939267869No Hit
TTCCACGGGAGAGCTATGGCGGGTTTGACTGTGAGAGACCCAGCGGTGGATC1470.10075186939267869No Hit
AGCGCATGGGTAGCCAGAGCAATCAGACAAGAGAAAGAAATCAAGGGCATCC1460.10006648252606183No Hit
TCGTCCGGGTGATTAACTATGTTAGTCTTTCAGTTCCTCAGCGTCATAATAA1460.10006648252606183No Hit
GATGCTGGGCAGAAGGTAAAGCAGAATGAACATGTGAGGAATCTAAAAAACA1460.10006648252606183No Hit
CGACCTGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1460.10006648252606183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)