FastQCFastQC Report
Sat 31 Dec 2022
SRR5844742.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844742.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219166
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC8400.3832711278209211No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT7580.34585656534316456No Hit
TGATTTGGGATGAATCCAGCACTTTTAAAACAGTAAGTGAGAAAGAATTAAA2450.11178741228110199No Hit
AACAACGGGAAGATACAGCTTTTTCAGACAAACAGAGAATTCACCACTACCA2350.10722466075942436No Hit
TCACCTGGGTGACAGAGTGAGACCCTGTCTCAAAAGAAAAAGAAAAAAACTG2330.10631211045508883No Hit
TTCAGGCGGGCTCAAAGACAAGTCACTATTCAATCAGAGGAGAAAAAAAGAA2330.10631211045508883No Hit
ATCGCCGGGTATTTAAAAGCATCCTTCAACATGGTTCTATGGAGAAAAACTG2270.10357445954208226No Hit
TGGCGGGGGATCGAGCCACTCTTTGACCGGTTGCTCATTTTCTGGTCTGACC2260.10311818438991449No Hit
TCTATTGGGACTGCAAACAAATAATAATCAACCCCCACTGCCTACAAACACT2250.10266190923774673No Hit
TTGCATGGGTAGGACCTAAATCTGAAGTGGAAGAAGGGCATGGAAAACTCCC2230.10174935893341121No Hit
CTTTTTGGGATAACATAAAAGAAAATGCCAATTTACTTATATAAAAAAAGTT2220.10129308378124344No Hit
TAACGTGGGAACTTAAGGGGAAAAAAAACTTTTAGAGCACTTACTGGCAACT2220.10129308378124344No Hit
GGATTAGGGCTACCAGGCTTCGGAATAATCTCCCATATTGTAACTTACTACT2200.10038053347690792No Hit
TATACGGGCCTTAAAATACATAAACTATTGTGTTGTAGAAGATTCCACATGA2200.10038053347690792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)