FastQCFastQC Report
Sat 31 Dec 2022
SRR5844741.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844741.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences218430
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC8880.4065375635214943No Hit
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT7630.3493109920798425No Hit
AACAACGGGAAGATACAGCTTTTTCAGACAAACAGAGAATTCACCACTACCA2440.11170626745410428No Hit
AATGATGGGCTGTTGAGGATTTTGGGGGCTGCTGTTACATTTAAGCCTTATG2410.11033282973950465No Hit
GAAGCGGGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCG2380.108959392024905No Hit
TTCAGGCGGGCTCAAAGACAAGTCACTATTCAATCAGAGGAGAAAAAAAGAA2370.10850157945337179No Hit
ATTGGGGCGGCCCGAGCGGGAAGCGCCGGGCGAGCCCACTTGCGGCCGTCGT2370.10850157945337179No Hit
TAACGTGGGAACTTAAGGGGAAAAAAAACTTTTAGAGCACTTACTGGCAACT2360.10804376688183857No Hit
TGATTTGGGATGAATCCAGCACTTTTAAAACAGTAAGTGAGAAAGAATTAAA2320.10621251659570573No Hit
AGAGAAGGGATGAGACGGCTGCTGTGCGTACTCCAAACTAGCTATGCTCCTG2320.10621251659570573No Hit
TAGCTGCGGGGCATGTTTAATATTTCAAAATGAGGTTTTAACAGAGACACAT2320.10621251659570573No Hit
TCTATTGGGACTGCAAACAAATAATAATCAACCCCCACTGCCTACAAACACT2310.10575470402417252No Hit
ATTACGGGGGGAAGGAAGAGACGCAGGCAGGCTGCGGTTACCCAAGCGGCCA2280.10438126630957285No Hit
TCAGCAGGGGAGTTTGCTTCTTATAGTGAAATTTGATCCTTGGATTTATAAA2280.10438126630957285No Hit
TACGCAGGGCATAGTTTGTGAACTAGACTGCAATTTAAACTAATACACATGA2270.10392345373803964No Hit
ATCGCCGGGTATTTAAAAGCATCCTTCAACATGGTTCTATGGAGAAAAACTG2230.10209220345190678No Hit
GTTTGCGGGCACTACATTCTGAATTCTTTGGGCTAAGCAGATGAAAAACTGT2210.10117657830884036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)