FastQCFastQC Report
Sat 31 Dec 2022
SRR5844740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216697
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT7910.36502581946219836No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC7880.36364139789660216No Hit
ATCGCCGGGTATTTAAAAGCATCCTTCAACATGGTTCTATGGAGAAAAACTG2610.1204446762068695No Hit
TCACCTGGGTGACAGAGTGAGACCCTGTCTCAAAAGAAAAAGAAAAAAACTG2490.11490698994448469No Hit
CTTTTTGGGATAACATAAAAGAAAATGCCAATTTACTTATATAAAAAAAGTT2420.11167667295809355No Hit
AGCTACGGGAGGGAACTGGGAGGGAAAACCAGGCCTCAAATTTTGTGTGCTT2250.1038316174197151No Hit
AGCCAAGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA2210.10198572199892014No Hit
TTCAGGCGGGCTCAAAGACAAGTCACTATTCAATCAGAGGAGAAAAAAAGAA2190.10106277428852269No Hit
ATTGGGGCGGCCCGAGCGGGAAGCGCCGGGCGAGCCCACTTGCGGCCGTCGT2190.10106277428852269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)