FastQCFastQC Report
Sat 31 Dec 2022
SRR5844738.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844738.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63082
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT6681.058939158555531No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC6230.9876034367965506No Hit
CACAGCGGGAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGGTCGCGT1590.25205288354839733No Hit
GTCGCGGGGGTGAATTAGAGCTGAAAGTCTTGCAAAGTGTGGACTCTCTCTA1520.2409562157192226No Hit
GTTTTTGGGAATGGATTCACAAAATATGATATCTTAAAACATGTTGAAAGAT1500.23778573919660123No Hit
AGCCAAGGGGGGCTCTCCCCTTCTCAGGGGCTTGTTGGCTTGCCTCTGATTT1480.23461526267397992No Hit
CTAGTAGGGAGCTGGTGATTGCTCTGGTGAGACTGAATGGACTTGCTGGTGA1470.23303002441266923No Hit
CATGATGGGATCAAGGAATGTTGACCGCATTCCTTTGAATTCACAACTAAGT1450.22985954789004787No Hit
CTATCAGGGGACGGGACACCTGCATCTGCCAACAAGACTGGAAGCAGGTGAG1390.22034811832218382No Hit
CCGGGATGGGCAAACTTAGAAAGTCTAATATCTTAATGTTTACTTATGTAGC1370.2171776417995625No Hit
CCAGATGGGGGGAGGAAAAGAAAGAAATTAGAATCTCATAGAAATGAAATAC1350.21400716527694114No Hit
AACATAGGGGTTTTGAGTAGGGAAAGGTTCATTTATTTTCATTACCTGGCAT1340.21242192701563045No Hit
TAAATTGGGCACACATCTGACATTCAAAGTCAGAAATTCACGTGGTCTTGCA1340.21242192701563045No Hit
TTCTAAGGGAGAGAAGGAATGCTTTCAGTGGGAAAGAACACCATCATCATTA1330.21083668875431977No Hit
AGAGAGGGGTGTGTCAAATGTGTATTTGACAATTGTTGAATTGTCAAACATG1310.20766621223169843No Hit
CATTTTGGGGATGAAATAGTCAAGGACCAGAATCTGTAATATTTTTATGTAA1290.20449573570907706No Hit
GGCTATGGGGAAATCTTTGATGGAATTAGCCATGCAGAACAGATACTAAATG1290.20449573570907706No Hit
ATCTCGGGGATATTTGTAATTACGCACAATGTTTACACACTGATATTGATGA1290.20449573570907706No Hit
GTCTTGGGGTGGATCTTGCACCAACATCTGGTACTTCAGCTAAGACACCCTC1270.2013252591864557No Hit
TTACTAGGGAACAAGTTGCAGAATTAAAACAGGAACTGGCAACTTTAAAGTC1270.2013252591864557No Hit
GTAGGCGGGACATTTTCTCCTGTGCGAATTTCAAAAAGCTATATTCATTTTG1240.19656954440252372No Hit
GTCACGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1230.19498430614121304No Hit
TGACTCGGGGCATTGGGGATTACATTTCAACATGAGATTTGGGCAGGGATAA1230.19498430614121304No Hit
GTATATGGGCAGCTTGGGCATATGAGGAAGTGAGAAATAGGGTTTCTTTCTA1200.19022859135728099No Hit
TAGCCTGGGACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT1190.1886433530959703No Hit
AGCACCGGGGACAGAAATTATGCAATGGTTTGTTGAGATACGGACTTGATGG1190.1886433530959703No Hit
TTAGCCGGGAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGCT1180.18705811483465964No Hit
TCTGCCGGGTATACCACTCATATCACAGTTTTTGAAATTCATCTTTCATTAT1180.18705811483465964No Hit
TTTTATGGGATGACCCACCAATCACATGCCTATCATATAGTAAAACCCAGCC1170.185472876573349No Hit
TCAAGCGGGCACTTCTCCCACCTGCAGAGCCAGTGTCCTTGGGTGGGCTAGA1160.1838876383120383No Hit
GCGTTAGGGGTGCCCGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1160.1838876383120383No Hit
TCAGTAGGGAGAGATAAGCAGGTACACTTGAAGTCAAAATGCAATCACAGTT1160.1838876383120383No Hit
TATTAAGGGGAGGCGGCGGCAGGGCTGAGCCAGCGACGCCCTCCATTCACTC1140.18071716178941694No Hit
AAAAAAGGGGGTGTCACCCACTGCATCTGGAGTACAGCTTCTCCTAGGACAG1140.18071716178941694No Hit
GTAATTGGGGTGTGTATGTATATTTAACTTTTTAATTTGATTTTATTTTTAA1130.17913192352810628No Hit
TCGAGCGGGAATATCACATAGTTGGCATTGCTGAATAGTTTCATCTCTTTGG1130.17913192352810628No Hit
AAATTAGGGACTCTTAGCTGCTGTCACTAGGATTGGCCATCAGATTCTGGAT1120.1775466852667956No Hit
GCCAACGGGTACTTACTCACATTTTTGAAATGTATGAAGAAATAAATCAGTT1120.1775466852667956No Hit
TGCGCAGGGAGCTTTGGCAAGGTCATGCTTTCAGAACGAAAAGGCACAGATG1110.17596144700548494No Hit
GTCAATGGGTGAGCTACACATTATTTAGATATTTCCCCTAGAGATTAGAAAC1110.17596144700548494No Hit
TATGCCGGGGCTTTTGGATTTGGTATCTAGTAAAATTTACCCACAGTAGCCA1100.17437620874417425No Hit
TTAAAGGGGACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTG1100.17437620874417425No Hit
AGGCTCGGGGAATTTCGCAAGCTGAAGCTTGTAATGGAATCCTAATAGAGAT1100.17437620874417425No Hit
CGACGAGGGGAACAACTGATTGCATAAGAATATAGAACCACCTGGAAGGTGT1090.17279097048286357No Hit
TGGCCTGGGGTGTGGTTCTCAGTGATATTCACATCGACATCATGGACTATAT1090.17279097048286357No Hit
GTATCCGGGTATGAAATCTGTATAAGTGTGTCCTTATACAAATTTTAGGCCA1080.1712057322215529No Hit
AAAATAGGACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAA1070.16962049396024223No Hit
CATAAAGGGCTTACTTGGAGAGACATATGTCTGAATTTATGGAGTGTAATTT1070.16962049396024223No Hit
GACTCAGGGTAAATATTGAATGACAAAACTCAGATGGAGGAAAAAGAACAAA1070.16962049396024223No Hit
AAAACTGGGAGTGAGTTGCAGAATGAAAATTGAGCTGGATTGGATGCATTGC1050.16645001743762086No Hit
GTGCAAGGGTGCCCGCTTCGGCCTCCCATAGTGCTGGGATTACAGGCGTGAG1050.16645001743762086No Hit
ATGACTGGGCATGTCATCAAGTAGAGAAAATATTTTTATTTTTGCCCAATAT1050.16645001743762086No Hit
GTTCCAGGGAACCTATTTTTAAAGAAACCTTTTTTGCTATTGACTGTTTTTT1040.1648647791763102No Hit
GACCCAGGGAGTCTAGGGACTGAGGAGTCGCCGCCGCCCCGAGTCCCGGTAC1030.16327954091499952No Hit
GATAGTGGGATAACTGGCTAGATAAAACACAACTCACTTAACCTTAACACTC1020.16169430265368887No Hit
TAAAGAGGGAAGGTACTGTGATCACCAGCCTACTTCCAATCTCCACCCACCT1010.16010906439237818No Hit
CACGTAGGGTACACCAATGGATAAACTAACGGAAACTGCTTTTTGACATTAA1010.16010906439237818No Hit
TAGACAGGGATGAAAACAATATGTTTTAAAATTTTCATTGCACAATATCGTT1010.16010906439237818No Hit
GTTTTAGGGTCCGATCTGCCATGGCCAGTCACCCGGAGCCTTCAGCTGGCAG1000.1585238261310675No Hit
TAAACGGGGTCTTACAATTACAAAGCCGATGCTGCTGAGAAAATCAGAAAAG1000.1585238261310675No Hit
AACTTGGGGCAGTGGCGTGATCTTAGCTCACTGCAAGCTCTGCCTTCCAGGT1000.1585238261310675No Hit
CCGTCCGGGAAGGCACTGAATATGCTTCATACAGAACAATTATCTGACTACA990.1569385878697568No Hit
AGTAAAGGGCAGCCACCAGGCTCCCTGTGTCCCTTCCATGGGAAGGTCTTCC980.15535334960844616No Hit
ACACAGAGGTAGAATAGATGCCAAAGTCATTTATTCAGTCCTTAGTTTTCTT970.15376811134713547No Hit
ATGCTGCGGGTGTTCGATTGCGGGTTCTCTGTCTCTGCGGAGGTGCCTTCCC930.14742715830189276No Hit
TTGACAGGGAAATATATTAATTTTATGTTTGAGGCATATGATAAAATGAAAT930.14742715830189276No Hit
TGTGCTGGGTAGGGCTAATGAGTCATTGTTCCTTAATATCGTTTTCAATATG930.14742715830189276No Hit
CGTTACGGGGAGGTAATGATAGTTCCCATATCAAAGAGTGGTGAGGACTGAA920.14584192004058208No Hit
AATTTGGGGAAGGGAACTGAGAGTTTTAAGAATCAGAGGGTTATCAACAGTG910.14425668177927142No Hit
GCTTGGGGGATGGCCCATCGATGAGCATTTTTAACATACTCCATAGTCTTTT900.14267144351796077No Hit
AAGGTAGGGGAGGGCAAGACCCCAGAGCCTTAGCTGAGCAAGCCCAGAGGGG900.14267144351796077No Hit
CCAACTGGGAGGTCTCAATTTCTCACTGGAAAATGAGTCTTTAAAATAGTAA900.14267144351796077No Hit
TATTACGGGTACATTTTGGATTAAACCTGTTTCCCGGTTATGTGTAGGGAAC900.14267144351796077No Hit
TCCATTGTGTAATAAACTTAGTAAAGCACCTGTTGTACAACTCAATGGCATT890.14108620525665008No Hit
CTTGCTGGGCTCAGCCCATGGGGAGAAACGGAGGCCTGAATACAGGCGGTCA870.13791572873402871No Hit
GCATAGGGGTCCATAACTGCTATTTAGACAACAGAAAGCACTTCTTCATAAC870.13791572873402871No Hit
ACACCAGGGACTTTGACCGCGATGATGTGGCTTTGAAGAACTTTGCCAAATA860.13633049047271803No Hit
TTAGTGGGGGGATGGCAAGTTGGATCCCTCTACCTTCCGAGGTCAGGAGTGC860.13633049047271803No Hit
TTGATCAGGGACGCTCCTCATACTAGGCCTACTAACCAACACACTAACCATA860.13633049047271803No Hit
GCGCAAGGGGGGCTGGGAAGAGAGGCGAAGCCAGGTCACCTTTCAAGGACCC850.13474525221140737No Hit
AAGTCAGGGTTCATCATCTTAAGTATTGTAAGCTGCTATGTATGGATTTAAA840.13316001395009672No Hit
TTTGTGGGGAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGC830.13157477568878603No Hit
GACCATGGGCCTGTAAAGCCCTTAATCCAAAAGCATTGTGCTCTTAATCTGT820.12998953742747535No Hit
CTAATGTCGGGAATCCGGTCACCTGCAATGTCTGGAGGAATTTTTGCTATAC810.12840429916616466No Hit
GCTATAGGGTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATC810.12840429916616466No Hit
ATAGCAGGGGTTTTTATACCTTCCCGCGCGGACGCCGGCGCTGCCAACGGAA810.12840429916616466No Hit
AAGCATGGGCAGTTTAAAAGTATTTTTAGCTCGTATGACTTGTTTTCATTCA810.12840429916616466No Hit
GCTACCGGGGATATTTCAAATTAGTGAGAAGGAATGGTATATTTAATAAGCA810.12840429916616466No Hit
TCAATGGGGTGACTCTAGTTAACAATTTATTGTATATTCTTAAATAACTAAA810.12840429916616466No Hit
CAACGAGGGCTCTGGCCTCTCCAGTCCTGCTTACTCCTCTATTTTTAAAGTG810.12840429916616466No Hit
ACATTTGGGTATCTGCATCTTTAGTTAGGCTGGTCTCAGGTTGCTCATAGGT810.12840429916616466No Hit
TTCTTTGGGGCTTTAGCCTGAGACTTGCCATAAGAAACTGCTGAGTACTTGG800.126819060904854No Hit
TGTTAAGGGTAATGAGATTTTACCGTGCAGCTAGTGTGTCCTTTACTCACCC800.126819060904854No Hit
GTACGAGGGGCCTCTCGTCTCCTTCCTGGTTTGGGCGGAAGCCATCACCTGG800.126819060904854No Hit
TACTTAGGGGAGCCCCAGCTCCAGCAAGAGCGCGGGCGGGTGGCCCAGGCAC790.12523382264354332No Hit
GTTACAGGGTAAGATAATGAGCATAACCCTCACCTCCAAAAGTTTCTTCATG790.12523382264354332No Hit
AGTTGCGGGCACTTTTTTGTATTTTTGCCATTTGAAAAGGTTGTGGTGTAGT790.12523382264354332No Hit
CATGAGGGGGTTATTTTGCCGTTTGACATTTTTTATGGTTCATTTATTTTTA790.12523382264354332No Hit
CGTTTGGGGAGGCGTGGGAAAGATGAATTACAAACAGTTCTTGAGATCAAGG790.12523382264354332No Hit
TGAGTAAGGGGATAATTACGTTTAAAGTGCAGTCATTTGTGGTTAGAATCTT780.12364858438223265No Hit
AAAGATGGGTGTTATAGGAAACATAAATAAGATTACAGAGGTATCAATTTGG780.12364858438223265No Hit
CAACCGGGGAATGGTGCATACAAGGCCATCCCCGTTGCCCAGGACCTGAACG780.12364858438223265No Hit
TTGGCCGGGGAAAGTAGATAGATCATTGGTTCAACCATTTTAGTGTTTTTGC780.12364858438223265No Hit
CACCGCGGCCTGAAGATGTCGGCCACCTTCATCGGCAACAGCACGGCCATCC770.12206334612092197No Hit
GTTCAGGGGCGATCTTTGCGTGGGTATACTATTATATAATGATTTTATGGTT770.12206334612092197No Hit
GTACTTGGGTAACTGTTCGTGCTTACTTAAATCAGACAGTTACAGAATTCAA770.12206334612092197No Hit
AGTTCTGGGTAAGACCAGACCACAGAGGCAGAATGAAGCAATAGCTCCAGCA750.11889286959830062No Hit
GGTTAGGGGGAATGAGTAATGATCATGTTAGGGTTAGGGTATTTACAGTATC750.11889286959830062No Hit
TGGTTAGGGCATGCATATCTTCTCCAACCATGAAATCAAAGCACGGTGCAGA750.11889286959830062No Hit
CTGAAGAGGGTAGGTACCAAATTGTGAAAGTTTGTTTTCAGTTATATTACTT750.11889286959830062No Hit
TTTAATGGGGGAGGAGCAGGCACATCTTACATGGCTGGAGAAGGAGGAAGAG750.11889286959830062No Hit
GTAAAAGGAAGGAAAAACTAGCACCCTTCTGTCCACTCAGCAATAAGAGGGA750.11889286959830062No Hit
TGGTTTGGGGAGCCGTACGCTCTTTACAGATACTAATGTCAAGAGTTAAACC740.11730763133698996No Hit
ACTGCTGGGCAAACCTCTCAGGCATTATTAAAAGGATAATAAGGAAATACTA740.11730763133698996No Hit
TAAGGGGGTGAGCACACCATTTGTGCTGCTGCTGTTGTCGTGAAATATAATA740.11730763133698996No Hit
ATATATGGGCCGATCTTACTGAGGGATCTTTGCAAAAGTGTAGCATTAAAGC740.11730763133698996No Hit
ATTCGCGGGTGAACCCAAGTAGAGAAGATAGATCTTGGAAGGAGAGATCCAT740.11730763133698996No Hit
GTGCAGGGATAAGAGGAGATTTATTATGGGAATTGGCTTATGTGATTATGGA730.11572239307567928No Hit
GGTAACGGGGCCCCAGATGTCAAGTAATGTTGGATTTTCTATAATAATTTAG730.11572239307567928No Hit
ATTACAGGGTATGACTTTTGCCTCATACCTTGAATCCTAAAAGTTTTCGCTG720.1141371548143686No Hit
CAAGCTGGGGGGTCTGAAGACAGACAGCCAGGGTTCAAATCCGGATCCCACC720.1141371548143686No Hit
CTTATTGGGGCCTTTATGGACCACATACGGATCTTCCAAGAGCAAGTGGAGA720.1141371548143686No Hit
ATGGATGGGAAGTGAAAAGAAAAAAATCAGTGTAAGTTAAAGGGCTTATATA720.1141371548143686No Hit
ATTGTCGGGAAGAAATCACCTGAAGGTACAAAACTCACTGGTAATAGTACTC720.1141371548143686No Hit
GATTCTGGGAGGACATATGAAGAGTGCAATGGCAAAACAAGAGCAAAAAGCA720.1141371548143686No Hit
ATTGATGGGGTGAGCGTGTGGGGAAAATTACCTCACTTTCCAGAACTTCCAT710.11255191655305792No Hit
CTCTCGTTTCGGGAAGTGAGATACAAAAGTAATTGCAGGCCCAGGGCTGATT710.11255191655305792No Hit
GTTATGGGGGGGACAGAGAGCATGAGCAGGCTCTGGTGTCTCCTCCTCTTCT700.11096667829174724No Hit
AACATTGGGGGGCGCCCTCCTCTGTGGATTCTGGCCAGGCCGGGTTCGGCGG700.11096667829174724No Hit
GTAGTTGGGGACCCTTGGCCATAATATGATTTATCTCCACACTAGCAGAGAC700.11096667829174724No Hit
TACGTGGGATATGAGCTCCGGCAGGGACTGAGGCTGGCAGAGCTGGCTCTCT700.11096667829174724No Hit
AGCTCGGGGTGATGATTCCCAATGTAATATTTCTTTCTTTATCAAAATGATT700.11096667829174724No Hit
GGGTAGGGGGAGGCTGCCAACCATTTTTCTGAAGTGATTATACTAATTTATA690.10938144003043657No Hit
CTACCAGGGGGAAGACTTGCCATTTTGTTTGGACAAAGTTGCAATTTAAATG690.10938144003043657No Hit
TTTGGAGGGACAAACACAGATGGTTATGAATAGAAATATTTATAAATATGTG690.10938144003043657No Hit
TGGCCTGGGACAGCATGTTTATTTATATTACAAGCCATTCAGGGACAAAGAA690.10938144003043657No Hit
GCCCTAGGGCATTTAAATTGGTTATTTGTCTTATTATTGGGTTGTAAGAGTT690.10938144003043657No Hit
ACCATTGGGGTAGGTAAATAACAGATGGCAAGAATGGGAGATGGGAATGGGG690.10938144003043657No Hit
CTTTAAGGGTCCGGACCGTTATTTTAGAAATTCCTGAACTCCTCAGTCCAGT690.10938144003043657No Hit
CCTCTAGGGGCTCTTCTGAGGATCCGGCAAGATGGCAGAAGTAGAGCAGAAG690.10938144003043657No Hit
TAAATAGGGGTGAGACAGACAATATTATCCTTATTGTACAGATGGGGGGGCT680.10779620176912591No Hit
TTAACTGGGAGCCAGATCTTATCTATGAAATTTCCCTTTGTAGACACACACA680.10779620176912591No Hit
ACTGCAGGGTCATATGTATGTTATGTATGATGTTAACCATAATATATATGGT680.10779620176912591No Hit
GCGGCTGGTGTCCTACCCCTTTGACACTGTTCGTCGTAGAATGATGATGCAG680.10779620176912591No Hit
GTACTTGGGGGCTTTGCGGCATGGCGATGGCGGAGGGCGAGAGGACTGAGTG680.10779620176912591No Hit
ACTACTGGGTATCATGTGTCATTAGAGCCCACTATGCCATCCAAACAGCTCT670.10621096350781523No Hit
ATGATAGGGATGATAAAGGGTCAATTCACCAAGAAGACATAACAATCCTGGA670.10621096350781523No Hit
CTTAATGGGGCGAAACACCATCTTTAAAAATAAAATCCAATCTGACAATGTT670.10621096350781523No Hit
CAGATGGGGTTTGTGCGGGGAAAGGGGTGAGTCTATGCATACCAGGTACCAC660.10462572524650454No Hit
TTAAATGGGAAAACAAATACACATTAAACAATAAGTGAAATAATTCCCAAGA650.10304048698519387No Hit
ATCATGGGCCCTAACGCTGCAGCGCGTGCGCGGAGAGAGGCCCTTTTTGAGC650.10304048698519387No Hit
TGCTGCGGGTGACTCGCAACAACTTTCTTTAGAATAATTCCCGCATGAGTCC650.10304048698519387No Hit
AATAAAGGGCACCAGCAGGTGAAGTGCATCATCACAGAGGAGAAGGTGTGCA640.10145524872388319No Hit
TAACCCGGGATGGTTCAATGTACTTACAATGGAATCCCCACTAAATTCTGTT640.10145524872388319No Hit
AATGTGGGGACTGTGAGGCACCAGATCCTGTGCTTCTGCAGGCCATTTTCTG640.10145524872388319No Hit
TCGGTGGGGGCATCTAAAATGCCATCAGCAATATACTAAATGCTAAGAATAT640.10145524872388319No Hit
TCAGTAAGGGGAACAGTCTCCTTCCACAAAACCATGGCGTCGCTCAAATGTA640.10145524872388319No Hit
TTGAATGGGGCCTGTGCCTAACCTGTGCTGCTCTGTAGCAAATGGGCTTGCC640.10145524872388319No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)