FastQCFastQC Report
Sat 31 Dec 2022
SRR5844703.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844703.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240025
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT15020.6257681491511301No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC13750.5728569940631184No Hit
AAAAGTGGGGATTCAGGTGTGCTGTATTCAGGGTTCCTATCTCATGTGCAAA2850.11873763149671909No Hit
AAACAAAAACGGACAAATGGAATCACTTCAAGTTAAAATGCTTTTGCGCAGC2760.11498802208103323No Hit
CAAATGGGGCTGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCC2620.10915529632329966No Hit
CGTGACGGGCTGGCCAAACTTGAGGTGGTCATCTCAGCACTGATGCTGGGCC2610.10873867305489011No Hit
GCACTGGGGACATTGACCTTAGCCAGTTTCTCTTGTCATATTTTCAACTGCC2600.10832204978648058No Hit
TGGTCTGGGTGAAGTCTGCCACTAGGAAAACAAAAGCACTAGCTTTTGTTCT2600.10832204978648058No Hit
CATCTAGGGGTTATCAGAACTCCTAGCTCTATTCGTAGAAAATTGTTTCTTC2590.10790542651807104No Hit
CAGTTAGGGAAGATTTTTTCTCTTTTGCAGCTACATTTGAAAGTGATAGAAT2560.10665555671284241No Hit
TTGCATGGGATTTCTGTTTTGCTTCTGTTTTATGCAAATATAAATCATTTTT2530.10540568690761379No Hit
TGACGCGGGGGAAGCGAGTAAATAAAAAGAAACGAAGTTGAAAGACTTGCTG2480.10332257056556608No Hit
CTTGGTGGGAGCAAGAATTTGCATTGTAAAATTGTGTTATAAAATTGGACTT2420.10082283095510884No Hit
AATCTTGGGGGTACTTAGAGTCGGGATGCACAACTTCAACCACCGACTTATC2410.1004062076866993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)