FastQCFastQC Report
Sat 31 Dec 2022
SRR5844702.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844702.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240017
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGCCGTCT14680.6116233433465129No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCAGGACTCATCTCGTATGC13620.5674598049304841No Hit
AAACAAAAACGGACAAATGGAATCACTTCAAGTTAAAATGCTTTTGCGCAGC2830.1179083148276997No Hit
ACACTCGGGCTAAGGAAACCACTAACAAAGCATAACTTTCAAGTTTAGTAGT2820.11749167767283152No Hit
CATCTAGGGGTTATCAGAACTCCTAGCTCTATTCGTAGAAAATTGTTTCTTC2790.11624176620822692No Hit
TTGCATGGGATTTCTGTTTTGCTTCTGTTTTATGCAAATATAAATCATTTTT2760.11499185474362233No Hit
TTGAGCCGGGAAATTAAGATATACTCTCAAGTACAAGAATGATACCATCTTC2700.11249203181441314No Hit
AAAAGTGGGGATTCAGGTGTGCTGTATTCAGGGTTCCTATCTCATGTGCAAA2560.1066591116462584No Hit
CAAATGGGGCTGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCC2560.1066591116462584No Hit
CAACAAGGGGTCTTATTCCCAATAGGTAAGTTATTTGGATATGGGTGGTCTT2520.10499256302678561No Hit
CTCCACGGGGGATTAACAATTCTGATAATGCTATACATGTATACTGAAATTG2520.10499256302678561No Hit
TGGTCTGGGTGAAGTCTGCCACTAGGAAAACAAAAGCACTAGCTTTTGTTCT2490.10374265156218102No Hit
CGTGACGGGCTGGCCAAACTTGAGGTGGTCATCTCAGCACTGATGCTGGGCC2460.10249274009757642No Hit
AATTCGGGGGGATGTGAATACAGGCAGTGATGGAGAATTAAGAACAGTTTTT2440.10165946578784002No Hit
TGAAGCGGGCTAATCACAGCAGTCCTACTTCTCCTATCTCTCCCAGTCCTAG2440.10165946578784002No Hit
CAGTTAGGGAAGATTTTTTCTCTTTTGCAGCTACATTTGAAAGTGATAGAAT2440.10165946578784002No Hit
GCACCTGGGTAAGAATACTTTCTGGGGTGTGAGCCACCTGAGTTATTAGTTA2430.10124282863297183No Hit
TTGCTAGGGGCTCCGGGGGGGCTGTGTAGACCACAACACTCAAACACAGTTG2420.10082619147810364No Hit
GCACTGGGGACATTGACCTTAGCCAGTTTCTCTTGTCATATTTTCAACTGCC2410.10040955432323542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)