FastQCFastQC Report
Sat 31 Dec 2022
SRR5844688.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844688.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences221258
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTGTGAGAATCTCGTATGCCGTCT5190.23456778963924468RNA PCR Primer, Index 19 (95% over 22bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTGTGAGAATCTCGTATGC4950.22372072422240102No Hit
GTTCAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA3480.15728244854423343No Hit
ATCTGCGGGCACCCCAGAACACCACATTGGCTCCACAACACAAGGAACTCAC2540.114798108994929No Hit
TAACAGGGGGGGAGCCGGGCCGGGGCGATGTGGAGCGCGGGCCGCGGCGGGG2330.10530692675519077No Hit
GCCAGAAAAACATTGAAATGCAGCTGCAAGCCATTCGAATAATTCAAGAGAG2330.10530692675519077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)