FastQCFastQC Report
Sat 31 Dec 2022
SRR5844659.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844659.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381182
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGTGTGAGAATCTCGTATGCCGTCT11950.31349853875576494RNA PCR Primer, Index 19 (95% over 22bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACGTGTGAGAATCTCGTATGC11790.3093010687807924No Hit
TGACTCGGGGGAGACACTTCGCCGAGGCACAGCAGCCGGCAGGATGGCGACC4220.11070827058990193No Hit
GAGGGAAAGCTTATAGCACTAAATGCCTACATCAGAATTTCAGAGCACAAAT4020.10546143312118621No Hit
CAAACGGGTGAGAAAGGTAATATTGGTAAATAAAGAAATAGGAAACAATGTA3990.10467440750087885No Hit
TAAGCTGGGGTCTTCAGTCCGTGGACTTTCCCGCTGCACACTGCCCTCCGAA3860.10126396314621361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)