FastQCFastQC Report
Sat 31 Dec 2022
SRR5844603.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844603.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174944
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC9620.5498902505944759No Hit
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT9420.538458020852387No Hit
GTAGGGGAACTCTCAAAACCAGTTTAAGCTCCATTCCCAGTCAAAGCCCTAC2590.14804737516005123No Hit
CTTACCGGGGATTTCTGTGTTCAATCCCTGCCTCTCCATGTAGAGTTACTAG2150.12289646972745563No Hit
GTCAGTGGGCTATGATTGTACTATTGCACTCCAACCTGGGTGATAGAGACTG2140.1223248582403512No Hit
GCCATAGGGGAGGCAAGGATTTCAGGAGCGAGGATTTCAGGACTGAGGCAGC2110.12061002377903786No Hit
TAGCGCTGGGATAAGAAACAGTTTGCAGCAGCCTGAAGGGATTGACAGAGCC2070.11832357783062009No Hit
GGGCTGGGACTGCATCAGGATATGGTGGTACCAGGAGACGATAAAGTAGAAA2040.11660874336930675No Hit
TCTGTTGGGATTCAATAACAGGAAAACAAATAACCCCTATTTAAACATGGGC2040.11660874336930675No Hit
GTTGAAGGGATGTGCATTCTATTTATAAAACATTGATAATTTTATATCACAT2020.11546552039509786No Hit
AAATATGGGTATGGATGTCATGTTAGCAGGCATGAAAACAACATTAATCTCC1940.11089262849826231No Hit
TTGAATGGGCATGTGAGTAAAATACATGATGTGGCAATGCTGAGAAAGACGG1930.11032101701115786No Hit
TCCGCAGGGTAACTTTGATGTGATAGTGTTCACCTCTGGTCCCAGCTACTAG1880.10746295957563562No Hit
GTGAGTGGGAGAGGAAGTGGGGATCGGCGAGCGGGTGGGTGCGCCTCGGGCC1870.1068913480885312No Hit
GACCAGGGAGATCATGAAGTCATAGGCTTCCAAGGCATAGGAAGAGATCTTG1870.1068913480885312No Hit
TACTGAGGAGCACCAGATCTTCTCCATAGTAAAAAATAAACATTCATGAGCC1860.10631973660142674No Hit
TAAGTGGGGATTTGGTAAAGCAACAGATTGTGATGGGAAAATGTTTTCTGTA1860.10631973660142674No Hit
ATTCGGGGGATCCAATTGAGTCCCAGTTTCAGTTTCACCTTTATCCAAGAGT1850.1057481251143223No Hit
TGATTCGGGATAGATCAAGTGGGTTCTCTCTTTAGCACAGGGCTTTTTAGCA1830.10460490214011339No Hit
GAACAAAGGGCTCTGAGCTGCTGCTTACCAGAAAGTACCATCTTCTTAAAAA1820.10403329065300897No Hit
GATTCAGGGGCTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCT1820.10403329065300897No Hit
CGCGCGGGCTTCCAACACTGCCAGATGGCCCCGCCTGTTAGGACCGCCTGCT1810.10346167916590451No Hit
ATGTCTGGGGGGCAATAATGTTGTAGAACAAGTATCTGGTGAGTACTGATAC1800.10289006767880007No Hit
AATGCAGGGCCTGCACCAGGGAGGAGTGGAGGACGAGGTAACTCAGCAGCAA1790.10231845619169562No Hit
AAAAGCGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1770.10117523321748674No Hit
GCGCAGGGCTGCTCGACGTGAGGGTGAAATGATTGACTTGTGACCTGCCAGG1770.10117523321748674No Hit
GCAGTGGGGTGCAGGGGAAGACCAAAGTTTGCAACTCGAACTGCTTTCGTCC1770.10117523321748674No Hit
AGCCAGGGAGATGACATGATCTGATACTTAGAAAAACCAAAAATGCTCCACC1750.10003201024327785No Hit
TTGACGGGGTGTTTCCATCCTGGTGAATGTCTCCATAGCCTTCACTTCTTAT1750.10003201024327785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)