FastQCFastQC Report
Sat 31 Dec 2022
SRR5844602.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844602.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170118
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC8690.5108219000928768No Hit
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT8580.504355800091701No Hit
GTAGGGGAACTCTCAAAACCAGTTTAAGCTCCATTCCCAGTCAAAGCCCTAC2300.1352002727518546No Hit
GTCAGTGGGCTATGATTGTACTATTGCACTCCAACCTGGGTGATAGAGACTG2200.1293220000235131No Hit
GCAGTGGGGTGCAGGGGAAGACCAAAGTTTGCAACTCGAACTGCTTTCGTCC2080.12226807274950328No Hit
TGCTTTGGGGAGGAATTGAAGGAGTTGGTCTCCACCTAGAGATACATTTGAT2030.11932893638533254No Hit
GACCAGGGAGATCATGAAGTCATAGGCTTCCAAGGCATAGGAAGAGATCTTG1940.11403849092982518No Hit
CTTACCGGGGATTTCTGTGTTCAATCCCTGCCTCTCCATGTAGAGTTACTAG1940.11403849092982518No Hit
GGGCTGGGACTGCATCAGGATATGGTGGTACCAGGAGACGATAAAGTAGAAA1940.11403849092982518No Hit
TCCGCAGGGTAACTTTGATGTGATAGTGTTCACCTCTGGTCCCAGCTACTAG1930.11345066365699102No Hit
TAAGCTGGGGATCTAAAACTGGGGTACTCAGAGAGGGGGAACGGATCCTGTG1920.11286283638415688No Hit
AAATATGGGTATGGATGTCATGTTAGCAGGCATGAAAACAACATTAATCTCC1880.1105115272928203No Hit
TACTGAGGAGCACCAGATCTTCTCCATAGTAAAAAATAAACATTCATGAGCC1870.10992370001998612No Hit
TTAGCCGGGTGCTGTCTTCCAGATACTCGTCTTACAAGTAACAACACCCATA1870.10992370001998612No Hit
TCATGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1860.109335872747152No Hit
CATCGTGGGAGGAATGCAGAATGTCACTGACATTCTGGAAATACTTTGGCAG1850.10874804547431782No Hit
CCATTAGGGGTAGGGACATTAGATATCACACATTCTACCTGTTCCCCTTTAT1850.10874804547431782No Hit
ACTGCCGGGGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGT1840.10816021820148367No Hit
TGAACAGGGGGGGGAAACTTCCTCTTTGTGTGTTACATATTTTTCTTCACCA1820.10698456365581537No Hit
TAGTACGGGAAGATACTATGAATGTTCTGAGTTTTGTTGCTGTTGTTGTTGA1800.10580890911014706No Hit
GCGTCCGGGGAGGGCTAGTTAATTCAACTCCCAATTGTTCTGAAAGTTTTTT1800.10580890911014706No Hit
TCTGTTGGGATTCAATAACAGGAAAACAAATAACCCCTATTTAAACATGGGC1780.10463325456447876No Hit
AGTATCGGGGGGGTCTGCAGTCAGCTCCCCAGTGCTCTTCTCGCCGGTCGGC1780.10463325456447876No Hit
GTTCATGGGGGGAAAAAATGAAAATAGGAAAAAAGGAAGTGAAAGAGATAAT1770.10404542729164463No Hit
CAAGTGGGGCACGTTTCTTCCTCAGAAAACCACTCTATCCCTGCTCCCTGCC1750.10286977274597633No Hit
CAGCTAGGGTCTCTTGGCGGGATTTATATTCAAAGATAAACTGTACACAAGA1740.10228194547314216No Hit
CTCGCTGGGAACGAGATACTGTCATGGATATTGTAAGAATTGTGGAGTAAAG1730.10169411820030803No Hit
CGTTCAGGGATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACC1720.10110629092747386No Hit
GACCGGGGATTATTCACTGGTGCTCCTAAAATATTGTTTTTCAGTGTAAAAT1720.10110629092747386No Hit
CCCACAGGGCTGATTTTAAGGGATGTTTCTAGTTCTCTTTTTTTGAAAAAAT1710.10051846365463973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)