FastQCFastQC Report
Sat 31 Dec 2022
SRR5844598.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844598.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224436
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC8180.36446915824555776No Hit
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT8010.3568946158370315No Hit
GTTGGCGGGAGAGATGCCATTAGCTGACCATGTTGCTAAAAATACCCCCGCA2780.12386604644531181No Hit
GCAACAGGACGATGTTGCCACCATCCTGTCTCGCCGTATTGCTGTTGAATAT2760.12297492380901459No Hit
GATGTTGGGGATTCTGGAAGGAACTCGGCGTGAGAAACATGTGACTTCCCCT2710.12074711721827158No Hit
GTAAGCAAGGGGAGTGGGGGCGGGGCTTGAGCCGCGGATTACCAGCACGCGC2500.1113903295371509No Hit
ACCGTAGGGCAGAATATTCATACTGGTGAGAAACTTTTTGAATGCAAGCAAT2450.10916252294640788No Hit
TTTGTTGGGACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTGAT2430.10827140031011069No Hit
GTATCCGGGATTATAAGAATCAGAAATATTTTTGCATGTGGTTGCATGTAGT2430.10827140031011069No Hit
TGCACATGGGGGAAGTGGAAAGCATGCCTGTTTGGGTCTCATGGAATCCCAG2410.10738027767381347No Hit
TCCATGGGGACCGGTAGTGGTGACGGGGCCTCCAAAGTTGGAAAGAGCACTT2400.10693471635566487No Hit
GAGTGTGGGGGGTCACGCACTGTTACAAAAGGAAGTTAAAAAAAGATAGAGG2340.10426134844677323No Hit
TTGTAAGGGCTGGTAAAATTTGAATGCACAGAACTGCAGCAGTAGCTTTCAG2340.10426134844677323No Hit
TAGCTAGGGACCAAAAATAAAGAGAAAATCTTGAAATCAGGCAGAGGAAAAC2310.10292466449232744No Hit
TATGCCAGGGATGTCGTTAAAGATGGTGCCACCTATAGTGGCCATTTTCGTT2300.10247910317417884No Hit
CTCATGGGGAGCTTCAGCTTCCTTAGAAATTAGCTCTGGGAGTGACTTTTCA2270.10114241921973302No Hit
TAGAGAGGGCAGCTGGGAGTGTTAAGAGGAATCCCTGAGAAAATGTAGATAA2270.10114241921973302No Hit
CTAGCGGGGACGCTCTTCCGATCTCGATGCGGGCAACTTTAAGGAAGGGGAT2260.10069685790158442No Hit
TGAAGTGGGCAAATCACAATGCAAGACAGCATAAGGAACAAAGGGACTACAA2250.10025129658343582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)