FastQCFastQC Report
Sat 31 Dec 2022
SRR5844597.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844597.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224745
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT8440.37553671939308997No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC8150.3626332065229482No Hit
TTGACTGGGGAAGTTTAAATCCAATGGAGAAGACTCAAGAAACAGTCCAAAG2750.12236089790651626No Hit
GTAAGCAAGGGGAGTGGGGGCGGGGCTTGAGCCGCGGATTACCAGCACGCGC2660.11835635942957574No Hit
TTTGTTGGGACTGCCTGTCGCTTGTCTTCTATTCACCATGGCTTCTTCTGAT2640.11746646199025564No Hit
GTTGGCGGGAGAGATGCCATTAGCTGACCATGTTGCTAAAAATACCCCCGCA2620.1165765645509355No Hit
CTCATGGGGAGCTTCAGCTTCCTTAGAAATTAGCTCTGGGAGTGACTTTTCA2610.11613161583127546No Hit
GATGTTGGGGATTCTGGAAGGAACTCGGCGTGAGAAACATGTGACTTCCCCT2590.11524171839195532No Hit
GCAACAGGACGATGTTGCCACCATCCTGTCTCGCCGTATTGCTGTTGAATAT2590.11524171839195532No Hit
TTGTAAGGGCTGGTAAAATTTGAATGCACAGAACTGCAGCAGTAGCTTTCAG2340.10411800040045385No Hit
AAACGAGGGGAAGAGAAAATCAGTTTCTCAGATGACTTTTCTAAAAATGGGT2320.10322810296113374No Hit
GGTCCAGGGTCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTA2300.10233820552181361No Hit
GAGTGTGGGGGGTCACGCACTGTTACAAAAGGAAGTTAAAAAAAGATAGAGG2290.10189325680215355No Hit
GTCAAGGGAAGTTTCCAGAGCCCTGAAGACAAGGGGTAACACTCCAAAATAT2290.10189325680215355No Hit
AACTTTGGGAATATTGGGAATATTAGTCATAATGTTCATGAATGGTATATGG2280.10144830808249349No Hit
GCTTCAGGGCATTTATGAACAAAATCAGAGTATTTTGTGTTGCAGTAATCAT2270.10100335936283342No Hit
GCTCAAGGGCTGCACTGCTGTTTGGTTTGGAGTACAAATTAGACTTATAGTC2270.10100335936283342No Hit
GCACCAGGGATGAAAAATTGAAGTTTTTATCCTCATCAATAATCAGGCAAAT2250.10011346192351331No Hit
TAGCTAGGGACCAAAAATAAAGAGAAAATCTTGAAATCAGGCAGAGGAAAAC2250.10011346192351331No Hit
GTATCCGGGATTATAAGAATCAGAAATATTTTTGCATGTGGTTGCATGTAGT2250.10011346192351331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)