FastQCFastQC Report
Sat 31 Dec 2022
SRR5844596.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844596.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223293
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT7990.3578258163041385No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC7330.32826823948802697No Hit
GATGTTGGGGATTCTGGAAGGAACTCGGCGTGAGAAACATGTGACTTCCCCT2630.11778246519147488No Hit
GTTGGCGGGAGAGATGCCATTAGCTGACCATGTTGCTAAAAATACCCCCGCA2620.11733462311850348No Hit
GTAAGCAAGGGGAGTGGGGGCGGGGCTTGAGCCGCGGATTACCAGCACGCGC2430.10882562373204713No Hit
GGTCCAGGGTCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTA2380.1065864133671902No Hit
GCACCAGGGATGAAAAATTGAAGTTTTTATCCTCATCAATAATCAGGCAAAT2380.1065864133671902No Hit
CTAGCGGGGACGCTCTTCCGATCTCGATGCGGGCAACTTTAAGGAAGGGGAT2370.10613857129421882No Hit
TTTGCTGGGGTATTGCTCTCAACAAAATTAAAATTATATATTTGTACAGATA2340.10479504507530464No Hit
GCTCCTGGGATGCAAGTGAGAATGCAGTGGAACAATATCCTCAAAGCATGAA2330.10434720300233324No Hit
AAGTGGGGGATTTCCTTACGTATAAAGAGTTCTTTTAAAATCATAAAGAAAA2330.10434720300233324No Hit
GAGTGTGGGGGGTCACGCACTGTTACAAAAGGAAGTTAAAAAAAGATAGAGG2310.10345151885639049No Hit
CTCATGGGGAGCTTCAGCTTCCTTAGAAATTAGCTCTGGGAGTGACTTTTCA2290.10255583471044771No Hit
TTATATGGGGAGCTTCTAATTAACACCAAACCATAAATACATGTCCATTATC2280.10210799263747632No Hit
ATTTGCGGGATGCTTTGCTCATTTGAATCAAATGCTTCAGATGGGTCAAGGA2270.10166015056450493No Hit
TGAAGTGGGCAAATCACAATGCAAGACAGCATAAGGAACAAAGGGACTACAA2270.10166015056450493No Hit
AAGCCTGGGAATTGCTGAAAACTCAAAGAGGTAGATAAATAAGCCTCCTTGG2260.10121230849153354No Hit
TTGGCCTGGGGGTGGCTTTATATTGATAATGAAATATTCCAGAGCAAAACAC2250.10076446641856217No Hit
AGCCAGGGTGGTGGAGAGAAAGGAACACATAAAGGAATAACATGAGAGAAGG2240.10031662434559077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)