FastQCFastQC Report
Sat 31 Dec 2022
SRR5844582.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844582.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161338
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC7850.4865561739949671No Hit
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT7800.4834570900841711No Hit
GTTACAGGGGTGGGAGAAAATTTTCGCAATCTATCCATCTGACAAAGGATAA2250.1394587759858186No Hit
GCACATAAATAAATAAATGACAAAAGAAAGAAAAAAAGGCCAAAAAGTCTAC2170.13450024172854505No Hit
GCTATTGGGTTTGCAGAACATAACATTCTTTTATCTACCACCTGCTTCCTAA1790.11094720400649569No Hit
CAATGCGGGGGGAGGCCACGGTGGGCAAATCACTTGAAGCCAGGAGTTCAAG1660.10288958583842617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)