FastQCFastQC Report
Sat 31 Dec 2022
SRR5844574.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844574.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269410
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGC16110.5979733491704095No Hit
CTTATACACATCTCCGAGCCCACGAGACACGAGTCTATCTCGTATGCCGTCT14410.5348724991648417No Hit
GCTGCGGGGAATGTTTTTCTCTAACATCGGCCATTAATTGGTTCAATAAGGT2880.10690026353884415No Hit
GCTAACGGGAAATAGACTAATTCTCCAAAATATAATTGAAATAACAGCCTCT2710.10059017853828738No Hit
AAGGCAGGGAAACTACAGTTGATAGTGAGATGCTTCTGTAAGCACTGGGGTT2700.10021899706766638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)