FastQCFastQC Report
Sat 31 Dec 2022
SRR5844559.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844559.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171500
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGCCGTCT13230.7714285714285715No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGC12320.7183673469387755No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCTTATAC2640.15393586005830903No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCT2250.13119533527696794No Hit
TACGTCAGGGCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGAT1930.11253644314868805No Hit
CGGTTTGGGAGCAACGGTAGCATGGAGAAAACTTGTGAGGGGCAGGTCATTT1740.10145772594752187No Hit
CTCTACGGGACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCGTA1730.10087463556851312No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)