FastQCFastQC Report
Sat 31 Dec 2022
SRR5844558.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844558.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170163
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGCCGTCT12940.7604473357898015No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGC12820.7533952739432191No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCTTATAC2520.1480932987782303No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCT2290.13457684690561403No Hit
TACGTCAGGGCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGAT1900.11165764590422124No Hit
GACGCTGGGGTGACAGCTGAAGACAAGGGTACAGGGAACAAAAATAAGATCA1870.10989463044257565No Hit
CGGTTTGGGAGCAACGGTAGCATGGAGAAAACTTGTGAGGGGCAGGTCATTT1830.10754394316038153No Hit
CTAGAATGGGCAGGCCGGCGGGCGCGCCCGAAGCGCCCATCCTCGTGGTAGG1800.10578092769873591No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)