FastQCFastQC Report
Sat 31 Dec 2022
SRR5844557.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844557.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170988
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGCCGTCT13090.7655507988864716No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCTCGTATGC11880.6947855989894028No Hit
CTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCTTATAC2420.1415303997941376No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGAGGCGTAATCCTGTCTCT2120.12398530891056683No Hit
TACGTCAGGGCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGAT1810.10585538166421037No Hit
TTGGTTGGGATATGGTGTTGGTTTCCATTTTTTGTTTGTTTGCTTGTTTCCA1780.10410087257585329No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)