FastQCFastQC Report
Sat 31 Dec 2022
SRR5844511.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844511.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36173
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC1210.33450363530810273No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT960.2653913139634534No Hit
TTCAGAGGGACTTAATATAGGCTAGAAGATAGCAATTGAAAACTCAAATTCA550.1520471069582285No Hit
TCTATAGGGATTGGACAGAGTAGTTTCCATAGGAGCTGGTCTGATATCTGGT550.1520471069582285No Hit
CTGAGTGGGGTGTATACAAGTGAGATTAACTAACAACAGCTAAAGTGAAAGA540.14928261410444255No Hit
ACTCATGGGGTGGTTTGCCAGCAGTCAGCCACACAACGACTGGAACATGCAT540.14928261410444255No Hit
TACTTAGGGCTACTAATGCTGTTATTTGTTTATTTAGGAGTTAGTTTCCACT540.14928261410444255No Hit
TTTTACGGGAGGCTTCAATTCAACCTTGAAGCCATTTGGGCCTGGGCTTTTT540.14928261410444255No Hit
GTACAGGGATGAGCTGCCGATGTGGTGCTTAGTGATTGCGGTTTCGGTCGCT510.14098913554308462No Hit
ACAAACGGGAGAACTAATAAATAAATTCAGTATGATTAACAGGATGAAAGAA500.13822464268929863No Hit
AAAGCCGGGAATATAAATACAGGTATATGAAGTCAGGCAAAATACCTACCAA500.13822464268929863No Hit
AATCGCAGGGTAATATCACTGTGTTGTAATTATGAAGGCCTAGTTAGTAAGG490.13546014983551266No Hit
GTACTTGGGACTGAAAGTCGAGAAGGCCTTGCACAGCAAGTTCAACAGAGTT490.13546014983551266No Hit
ACGTCCGGGAAGGTGAAGACAGTCTGCCACTTTAGTTGTTCCCTTGATAGTA480.1326956569817267No Hit
AACAAAGGGGGAGTTGTGAATTCATGTAGAGGTGGCAAACCTCTACCTTGTG470.12993116412794073No Hit
GGTTATGGGTGGTTTGTACATCATTATTTCTCCTGAATTGCAATTAAACTCC470.12993116412794073No Hit
AAGAACGGGCCACCGGAGCCGCCTCGGTCAGGGCCACCACTGCCCAACGGCC460.12716667127415476No Hit
CTGCATGGCGGGTTTGATTGTCTGTCAGCCATTCAATAGATTGAGAGTGACA450.12440217842036877No Hit
TCGTCAAGGGCTGCCCTCAAGCGGTTCATTTTCTTGGGAAGGAGGAGAGCAG440.1216376855665828No Hit
AATAAAGGGCTGAGAGTGGGAAGAGAAAGTAGATGTTTTCTACAATGGTGAA440.1216376855665828No Hit
TCTACGGGGCTCTAGCGGCTAGTTGCTGTGGCTCTGGACACTAACGGGCCTG440.1216376855665828No Hit
TTGCTAGGGAGCTTGGAAATGACTGAGCCAGGATTGAAATGCAAGTCACTGT440.1216376855665828No Hit
GACCATGGGCATAGCAAATTACATTTAATATTTTCTGTTTTTAATAAATGTA440.1216376855665828No Hit
GCCTGGGCGACAAGAGTGAGACTCGATCTCAAAAAAAATTATTTGTAATTAA440.1216376855665828No Hit
ATCGTAGGGTCCGCAACTACCCTGCTGCTGCTGCTGCTGCTGCCCACAGAAA440.1216376855665828No Hit
TATGCTGGACGTATGGTACGGCCAAATCAAGATGGCACTCTGATAGCCAGCT440.1216376855665828No Hit
TGTAACGGGATACTTCTGCTGAGTTTAATATTCATCTAGAGTCAGTTGTGTT440.1216376855665828No Hit
TCATAGGGAAGAAAGATGAGTCCACTATAAAATGTATTGCTAAGATTTCATA430.11887319271279684No Hit
ATTTGCGGGTGAGTCACCTTAACTTTGAACCATTCTTTGGAATTGGCGTGGT430.11887319271279684No Hit
TCAAGTGGGACTTCAGGCATTCAGCAGATTTCAGAAAGAATTACCTTATTTT430.11887319271279684No Hit
CGTAGGGGCAGTGTGGTTTCAACCCTACTTCTGCATCTTAAAGACACTGTAT430.11887319271279684No Hit
TCTACGGGGAGCGCAGTCTCGGCCACATCTCGCTACATCGAGGAGCAGCAGG420.11610869985901086No Hit
GATCATGGGAGCCATAATAATGAATACCAAAATCCACCTTTTATTAGAGATT420.11610869985901086No Hit
ACTCGAGGGACCTCTGCTGAGAAATATAATGCCAGGGATCTATTTCAGTTCT420.11610869985901086No Hit
AGCGAAGGGAAATGAATGAAATATGGAACTGTGTCCCGTGTACCTTTCAAGG420.11610869985901086No Hit
CACACCGGGGGATATGAACTTCTTATTAGATATATGGCTTGCAAATAATTTC420.11610869985901086No Hit
TTTCCCGGGTTACCAGGCAAAAACAGCTCTTTTATCTTCCTGCCAAGAAGAA420.11610869985901086No Hit
CAACTTGGGCACTATAGATAAGTGTTTTCATATACCAGTGAGTATTTTTTTG420.11610869985901086No Hit
CGACTGGGTCAACCAGCACCTAAAAAGACTCTTTTCAAAAAATCACAGAAAC420.11610869985901086No Hit
CAATTATGGGGTTCCCAAAACAGATTCTGCTTTTTGCTTCCACAGAGCCTTT410.11334420700522488No Hit
GCGTATGGGCTGAAATATGTATAGTTAATCGTTAGAGCATGGAGACAGTTGT410.11334420700522488No Hit
TGAACTGGGAGACACTGTTCAAAGAACTTCATGTTAACTCATTTAATCCTCC410.11334420700522488No Hit
AAACTCGGGATCTTGACAACAGTTAGACCAGTTCATTTAACTAGTTTTTAGT410.11334420700522488No Hit
TGCTTAGGGAAACTAAGTCAACCCTTTTAAAGACTTCTTGAAATTTTGTACC410.11334420700522488No Hit
TTCAAGAGGGATGGGCTTTTAATAATATTTTTTCTCTTCTAGCTGTTGCACT410.11334420700522488No Hit
GGTTCAGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG400.11057971415143891No Hit
TTACACGGGACAATTTTATCTTCTGGCAAAGGGACATCATTCCTGTATTATA400.11057971415143891No Hit
TTTATTGGGTGTGCGAGGGAGCACTATCCATGAAATATAAACCAAAAATCTT400.11057971415143891No Hit
CAGCTAGGGGTGTAAATTCTCAAACTGGAATTATCTTTACCTTACTTGGAGC400.11057971415143891No Hit
TACAGTGGGCTTTTATATATACTGAGATACGAAAAAGTTTGTGTGACTCATT400.11057971415143891No Hit
TAATGTGGGATGAAGCCTCTTACGAAAAAATGCTTAAGCTGCGACGAGATCT400.11057971415143891No Hit
GATTCAGGGGACTAAATCTGAGTCAACTTATGGATTTACCAGTTTGTTTAGA400.11057971415143891No Hit
CCAATAGGGTTATTTTGTAGGAAAAAGCGAAAGTGTGAATGAGGATACATCG400.11057971415143891No Hit
AGGCATGGGACCTACCTGCTGATTGTGCTACTTTCCTACTCAAACATCTTGT400.11057971415143891No Hit
ACTTAAGGGATAGACACATTTATGTGTTTACAATACATATGCAGACTCTATA400.11057971415143891No Hit
TGATAGGGGAAACTAGTGCATGTATAAATAATGGCAGGATGGGGGGTACTGT390.10781522129765295No Hit
TGCAATGGGATAGGCTTCATACCTACTGTGTTAGTTTTAGTTTCCTAGGCCT390.10781522129765295No Hit
ACCTGGGACCTAAATCCCAGAGCTGAAATCAGCAATTTAATTGTCTTCCTTT390.10781522129765295No Hit
CTCTACGGGCAAAACCTGTTCTTCTTTTCATTTGGGAGAATTTGAAGAAACA390.10781522129765295No Hit
TCTTTTGGGGAGAAATTCAGCATTAAAGAACACTGAAGCGGTAAGGTCACTG390.10781522129765295No Hit
AGAAACGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC390.10781522129765295No Hit
AGGCTGGGGAATTGAGGTGAAATAGAAAATGAATGTCAATAGTAATCATTTT390.10781522129765295No Hit
AAAGAGGGATTAAAAAAATGTGACTAGATGCATGAGAACCAAAAGCAGATTA380.10505072844386697No Hit
AGTCACGGGTGAAAGGTTACTAGCAGGTTATTCAAAGGTACTTTTTTTGAAG380.10505072844386697No Hit
TCGAACGGGGATTTTAATCTTACCCTTCTTCTAAAACAGGGGTTCTTAAGCC380.10505072844386697No Hit
CGTTTTGGGGTGATCATGATGAAAATGAATGAGGATGGCCTGACGCCTGAGC380.10505072844386697No Hit
CGAAAAGGGAAGAGGATGTTCTTATTGGCCTACTCAATATGGAACTACAAAG380.10505072844386697No Hit
GCATACGGGAGACTGCACACAGCAGAAGAAAGCACCAGTAAACTTAGGGACA380.10505072844386697No Hit
TACGCTGGGAGAAGCAACAAGCTGCACCACACAGCCTGGGTGTGCGGCAGGC380.10505072844386697No Hit
ACCATAGGGAAGGTTTATTGAGAAAAACTTACAAGCAGAATAGCGAGCAGAG380.10505072844386697No Hit
CACATGGAGGGCACTCTGGAGGAATTCACTGTTAATTTTTAATGGTTTCTGT380.10505072844386697No Hit
GACATAGGGCAGCCAATTTAGGAAGTTAAAAAGAACAACAAAATAAACTCAA380.10505072844386697No Hit
TAAGACGGGTAGACAATGTGGAATTACATAACAGGCATTGCACTAAAAGTGA380.10505072844386697No Hit
ATAGCCGGGATGTAGGGTTGTTTCCTGCTGGAAACTCTAAGAAAGAATTCGC380.10505072844386697No Hit
TTGCCGGGGAATCCTAAAATGGTTATTTTCAGTGAATATTGGACTGATATCC380.10505072844386697No Hit
TAAAGGGGGGTTATTCTAAGCCCTTTGCCATCAATGATCATATCAATTGGCA380.10505072844386697No Hit
GTTAGTGGGTCCTCTTTCTCCTTTAGGGTCCATGGAGCAGTCCGCTGCTTCC370.10228623559008099No Hit
TAATGCGGGAGAATGGGAATAAAGAAATGAGAAATAGGTGGCAAATCTAAAT370.10228623559008099No Hit
AACTGAGGGCTTGGAATTTCCTCTCATTTCTAATTTCTGCCATAATGGATTT370.10228623559008099No Hit
GCTATCGGGATTAGCAGATCCTCAAATCACTTTAAAAACAGGAATTAATCTT370.10228623559008099No Hit
AGGCGTGGGAGGAATGTGCTTTAACCACTGCTGCAAAAGAGACAAGTCTGCA370.10228623559008099No Hit
CGCAAAGGGACTTGACAACACTGTAATGAAACTCCAAGAGGCAGAAAGGTCC370.10228623559008099No Hit
GCAGGTTGGGGTAACAAGAAACTGGTCAAATTTATTAAAAAGCTCTTATTTT370.10228623559008099No Hit
TGTGCTGGGAGATATGGTGATGTGATTAAAGCAGCACACATTCCTTTTGGTG370.10228623559008099No Hit
TTGCTTGGGAGATTTGGAAAACTTTAATTACTGGTGTTGAAATTGACCCATT370.10228623559008099No Hit
ATAGCAGGGACTCTCAGCTCTTCTCCATCCCGTGCTGTGCCCTGGGAGACTG370.10228623559008099No Hit
TCCAGCACTGATTTTGTACATAAACATTAGGCAGGTTGCTTAACCTTTTTAT370.10228623559008099No Hit
TCAAACGGGAGATGAGGAAGGTGAGGCATAAATGATGGGGTGACTTACTTGA370.10228623559008099No Hit
CTTGCCGGGAGAACAGTGCCTGGCACATGGTAGGTGCTCAATATGTGTTTAC370.10228623559008099No Hit
CGCGATGGGAGGGAGTCTCGTCCGCCCAAGCGGGCGCATCTGGGTCTGGCCC370.10228623559008099No Hit
GGCCCAGGGAATGTCTCATTTATAGAACATTATTTTACAATGAGGTTTTACA370.10228623559008099No Hit
CGCCTTGGGCATCTTTCTTTATTTTCTTCACATGCGACAATTTCTTAAGCAC370.10228623559008099No Hit
GATTTAGGGAGTAAAACCTGGTGCAGTAGGGGCAGGAGAGTTTGTGAGCCCC370.10228623559008099No Hit
GCCATGGGTTTGAAGCAGACTCAGACTGTCTCAGGATCAAAGCAACCCTCAA370.10228623559008099No Hit
ACATAAGGGATCTTTAAATGCTGAGGGCAAATAATTTTGAATTAAAATTTTA370.10228623559008099No Hit
GAGCCTGGGGAATAAGATAGAAGATTATTTTCTTCTAACAAAAAGTCTGGCT370.10228623559008099No Hit
GAGCGGGGGGGAACGGGAAGAGCCACTGACCCTGAGACCAATTTCCAGGCAG370.10228623559008099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)