FastQCFastQC Report
Sat 31 Dec 2022
SRR5844505.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844505.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57676
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT2770.4802690893959359No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC1950.3380955683473195No Hit
AATACAGGGCAGCCTGCAGAAGCAAGAGGAGCAGTACAAATTACTCTATGAA700.1213676399195506No Hit
GTATCTGGGCAGAATATATAGCTTCTGTGTGGAAAGGAAGATAGTCATATGA650.11269852278243983No Hit
TTGCCAGGGGTTGAATAGGAGTGGTGAGAGAGTGCATCCTTGTCTTATGCCT630.10923087592759555No Hit
TAGCTCGGGATATAGAGTCTGCCTCCAATCCTGCTGGCTTCAGCCTGGAGAA580.10056175879048478No Hit
GCGATAGGGCAGGAACCATGAATTTGTGGGTGACATTATCTAATGTGCATTT580.10056175879048478No Hit
ACTAGAGGGCCAGCCATGAAAGGAATTTTGGAAATTGTGTTCTTTTCCATGT580.10056175879048478No Hit
TTTCCTGGGCGACCCCCCAAAGTGCTGATTACAGATGTGAGCCACTGTGTCT580.10056175879048478No Hit
TAAGCAAGGGCTTGTTAATTTGAAGTTTTCTTCCTTCGTTTTGGAATGATAG580.10056175879048478No Hit
ACGGCGGGGCTTTCATGCTTCCAGTGAAACATCTTCCAACCAAAAGCAGAAA580.10056175879048478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)