FastQCFastQC Report
Sat 31 Dec 2022
SRR5844503.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844503.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56394
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT2470.437989857076994No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC2100.37238004042983297No Hit
TTTCCTGGGCGACCCCCCAAAGTGCTGATTACAGATGTGAGCCACTGTGTCT740.13121963329432207No Hit
AGCATAGGGATAAAGTCCAGAAACAAATTCCAATACATAATATGTACATATT660.11703372699223322No Hit
CTGCAAGGGTATTCTGCAAAGTTTGTTTGTTTTTAGATTTTTGGTAGATTCT630.11171401212894988No Hit
CACACAGGGATTTTCCTACACCCACCCACCTTGTTGAAAGGGAGGTGGGTTT600.10639429726566656No Hit
ATGCGTGGGCGATCTGTACACGGATGACATTGTAAGAAAAATTCGAATTGCT600.10639429726566656No Hit
TAATGTGGGGTTCTTGTTGGTTTGCACATAGTTGCATATACTTCTTTGTAGC590.10462105897790545No Hit
ATATAAGGGTGGCGACTTAAGAGATGGTGAATCTGGTGCACCATGCACTTTC590.10462105897790545No Hit
GTTACCGGCAAATGATTATTTAATTTTTAAGAACTACCTCAAACATCACCAT570.10107458240238325No Hit
TTCAACGGGTACACGACGCTCTTCAGATCTACTAGTGGGGGATCATGGAAGA570.10107458240238325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)