FastQCFastQC Report
Sat 31 Dec 2022
SRR5844502.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844502.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65385
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC1860.28446891488873594No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT1570.24011623461038467No Hit
TATTGTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA820.12541102699395887No Hit
GCTCATGGGGTCTCATTTTTGATGTTTATTTATTATGTTCATTTGAAAGTTA810.12388162422573984No Hit
GCTGCGAGGGAGATCAAAGCTAAGTGTGGAGAATAAGGGCTGCTTCTCCTTT810.12388162422573984No Hit
CTTGATGGGATAACAACAACAATAAAAACCCTGGAAATAACAACTTCTGGGA780.11929341592108282No Hit
GCAAACGGGAAACTAGAGTGGAATGGATGAGCGCCTTGTAAAGAGACATCCA770.1177640131528638No Hit
GCTTTTGGGCACCACAGGGATGGATGTCCTCTGGGCAGGGACCCCCATGGTG760.1162346103846448No Hit
TAAGCGGGGAGAATGAGACCTTCCGGCCCAAGCGTGGCGCTGCGGGCACTTT750.11470520761642578No Hit
CCATAGGGACATAAGGACCCCAGCAGCAAGCCTGCCTGTGGACCATACCAAA730.11164640207998776No Hit
TATCACGGGAATCTCAGGCCTCATGAAGCTTATATACCATTAGTATAGTTTT730.11164640207998776No Hit
TCTGCTTACGGGATGATGGAATTTATCATAAAGCTTTGTGATTAGTTTGTAC710.10858759654354974No Hit
TGGACTTGGGATACATGAATGCACGCACAAGGCAATGTTGGGCCTCGGGCTT710.10858759654354974No Hit
AACCTTGGGAACATCTGCATATTATGTCATTTGTCCTGTGTGAGAGAGTTAA700.10705819377533074No Hit
AATCCAGGGCTGCAAAGCACTGCTCGAAGACTTTTCTCTCAATGAAACTCGC690.10552879100711172No Hit
GTTCATGGGGTGATAGTTTATGCATCACATAAAATTTGCCATATTAACCAGA690.10552879100711172No Hit
CAGACAGGGTCTCTCAGGTGACTCTATCTTCTGGTTTGCCGGCCATCCCATA680.10399938823889271No Hit
AATCAAGGGCTATCAAAAAGAATAAAATATTGAGGAACACACTTAACAGAAG680.10399938823889271No Hit
CAGTAAGGGGAGGATGAGGAGGAGAAGAAGAAGATGGAAGAGAGCAAGGCAA680.10399938823889271No Hit
AGGAGTGGGTTGAGGAGAATTAAGGAGAATGGAGAATGAGTGAAAGTCAATA670.10246998547067371No Hit
ATTTAAGGGCTTGCGTATTTTGTATTCTTTGGAATGTGATGAAGACTGATTT670.10246998547067371No Hit
CACACAGGGCATGACGCTCTTCCGATCTATGATGGGGGTGTGGGAGTGTTCT670.10246998547067371No Hit
CGCTACGGGCAGTATGAGATGGTGTAAGGAGAAGTCTTTCAAGAATGACGGA660.10094058270245468No Hit
GCGAGAGGGAATGATGGTAAATGTAAAACTGGAAGTGGAGATATCGAGAACT660.10094058270245468No Hit
AACAATGGGACTGCCTGGCTGGACCCTTTAGCTAGTTAGAGCATTTATTGCT660.10094058270245468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)