FastQCFastQC Report
Sat 31 Dec 2022
SRR5844496.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844496.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205141
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC3200.15599027010690208No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT3040.14819075660155698No Hit
TGGCTTGGGGGGAAAGGGTGTTTGGCCTTGACCAGCCACTGCTGACCTCAAT2500.12186739852101726No Hit
CGTTCCGGGCTACTAGTTCAATGTGCTCTTTTTTACTTGACTCCAAATGACA2500.12186739852101726No Hit
ACCTGTGGGACTGGGAGTCAAAAAGAGTCAATGCTATTACTGGCATGTTAAA2390.1165052329860925No Hit
TTGACGTGGGACTCTTGTCCTTTTGATGGCATGATAACAGAAACTAAGGGAA2380.11601776339200842No Hit
ATGTACGGGGGAATGAAAAAATCTAAGATTAGTTGAGTTCTTTGCTGCCTTC2300.11211800663933587No Hit
GCGCACGGGACTCCGAGAGCCGCAGCGGCAGCGGCGCGTCCTGCCTGCAGAG2290.1116305370452518No Hit
ATTTGCGGGTCTGAGCGAGGGGGCCTCTTTTCCTGGGGGAAAGGCACAAAAA2250.10968065866891552No Hit
CAAGCTGGGATTCTTCATTTATGATAACGGTATATTTTATGAAGAGGTTTCT2190.10675584110441112No Hit
TTTACAGGGGGCAACAAATTTGGGACATTGTACTTTCTGTTTTAATGTCAAT2180.10626837151032704No Hit
TGTAGCCGGGAGATATGACAGGAAGATTAATGGTACACAAGCCCAGTTAGTA2180.10626837151032704No Hit
CTGAGTGGGGTTGGTAAGGAGTAGTGGTCAAGTCTACAGCAGTTCTACCTTC2170.10578090191624297No Hit
TAACGAGGGTACTGCTGCTCTTTTACAGTTAGCTCTAAATTACTTGTTTGAA2130.1038310235399067No Hit
GTAGGCGGGATGTTAGTGCATTAGAGAGACAGCAGGTTTCTTTGCTGGAGAT2130.1038310235399067No Hit
TTGTTGGGGAACCGTGGGCCTGTTACCTCCAGTACGAGCCATGAGCCAGCGG2130.1038310235399067No Hit
TAACCTGGGATATCTTCTTTGGAGAGAGGTGTCTGTTCAGATCCTTTGCCTA2120.10334355394582262No Hit
CCTTGTGGGACTCGTGGCAGGCATTGCTAGTCGATCCATGATACTCTTTCCT2080.10139367556948635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)