FastQCFastQC Report
Sat 31 Dec 2022
SRR5844484.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844484.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69758
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT2670.3827517990768084No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC2400.3440465609679177No Hit
TATGCTGGGCTCAAACAATAGCAAAAAGAACAATCCAACTTAAAAATGGCCA1000.14335273373663238No Hit
AAATGTGGGGGCAGTGACATAGCTTATGAAAGGCACAAGTGGCACCAATAGA980.1404856790618997No Hit
TGGCTTGGGGGTTCTATGGTGGGAGAAGTGAACCTTTATTATCTGGGTATTC980.1404856790618997No Hit
TATGCAGGGATCCTCCAAATTCATTTTTGTATATGGGGAAATTATAAAGCTT970.1390521517245334No Hit
TGCCGGGATCACGCCCTGGCACTCCAGCCTGGGTGACAGAGACTTTGTCTCA960.13761862438716707No Hit
ACTGAAGGGAAAGAGGACATAGACTATAGGCATTTTAAAGATGAAGAAATGA940.13475156971243443No Hit
CACGGCGGGGCAGTGGTTCAGCAATTAGCCATCTAAACACAAAATCTATAGT920.13188451503770177No Hit
GATTTGGGGATCTCATTAACACAAAGAGGTCTGTGCCTGACCTAGGATCTTT920.13188451503770177No Hit
TGATCAGGGCCCCCACCCCATGTAACATCGATACAATGCTACTATATAATAT910.13045098770033545No Hit
ATCTCAGGGGACTCCACTAATAGAGGAATAAATGCCTAATAAAAAGAGAGCA910.13045098770033545No Hit
CATGAGGGGCATCTATCTGAGTGAGTCTGGCAGGCTTTTTAGTTCCTGAGTT900.12901746036296913No Hit
CAGTGAGGGGGATATAAAGAGTCAAGATTCAGGTGTGCTGTATTCAGGGTTC900.12901746036296913No Hit
AGTGCTGGGTATTGGATGAAATCCCAAGGGAGATGGACGTAAGAAGAGGTTA900.12901746036296913No Hit
GCAACAGAGGATGTTTTGAAAGTAGATAGGTAGAAATTATGTGAACTGAAAT890.1275839330256028No Hit
ACGCCGGGATAGCTGACCTTGAATGAGTTGTTTCATCTCTCTGCCCCTGTTT890.1275839330256028No Hit
GCATGTGGGACTCACAGTAAAAATTCATCCAATGGGTTCTGTTTTAATGAAA880.1261504056882365No Hit
TGCTCTGGGCCAGAAACAGAGACTCAAAAGTGATTCTCAATGAATACCTTTT880.1261504056882365No Hit
CAATCTGGGATAGTTGAACTTAAATATTTAAATTCAATTTTAGATTTTAAAA870.12471687835087016No Hit
ACTTACGGGAGGGCTCCGTGTTGTAGCCAAGTGGTCATCCAATGGCTACTTT870.12471687835087016No Hit
CCAAATGGGGGGGAAAAATAACTGTTTGACTTTCTGGAATATGTGATATAAG860.12328335101350382No Hit
AAATCGGGGAATTGTGATAGATCAAGAAAGCAAAAAAACAAATACAGAAAGT850.1218498236761375No Hit
GGCGTGGGACTACTAATATAACTACTGTTTCCATGTCCCATGATCCCCTCTC850.1218498236761375No Hit
TGCCAAGGGCGATCTGTTGGGGGGATCCTGAATCCATTGTGGCTTTTCAAGA850.1218498236761375No Hit
TGTGCAGGGGTCCCACTTTGTTACACAGTGGAAATGATAAATCTAGGTAGGA840.12041629633877118No Hit
GGTATGGGGGCGATCCTTTGGCCTCGGCCTCCCAAAGTGCATGAGCCACCAT840.12041629633877118No Hit
TTATCTGGGAGAGATGAGCCACTGTGCTCAGCCCTTTCTGTAATATTTTATT840.12041629633877118No Hit
GCGCCCGGGATCCAGGGGGGTGACTCACATTTGTGATTTGTATATGTTGAAC840.12041629633877118No Hit
GTCACAGGGTCACACTCTGTATTCTGGTATTCTTACTACTTGAGCTCAGCTC840.12041629633877118No Hit
CAATGCAGGGAAACAGTACATGGTAACCCTTGAAAGGTTTTAAACTTGTTTC830.11898276900140486No Hit
AATGACGGCACAGACATCTGGGGGAAGAAAAGGAGCAGGAAACTACCCCGCA830.11898276900140486No Hit
ATAACAGGGTCTCTCCTCAAATCTCTGTAAGGAAGGTTTTATTGCTCTGTGA820.11754924166403853No Hit
ATTGCCGGGGTGCTGTTTAAAAAGCAGATTTTATTCTTTGCCTTTTGCATGA820.11754924166403853No Hit
CTCTTCGGGATATTACTATTGGGAATCTAAAATGATGTAGCTACTGAAGTTA820.11754924166403853No Hit
AAAAAAGGGCACTACTCCCGGCTAATTTTTGTATTTTTAGTAGTGATGGGGT810.11611571432667221No Hit
CTTCTTGGGATAATGAAACTATCTACAATTCTTGTTTTAGCACATCTGTTAT810.11611571432667221No Hit
TAGCGTGGGCATCATTAAAATCTCTTTCCTGACCTTTGCTTTCTAGGTGATT810.11611571432667221No Hit
TTAGATGGGATCTTTAATTAATGAGGTAATTCGGGCAAAGAGTAGAATTTAA810.11611571432667221No Hit
TAAACTGGGATATGCATTTTTAGCTTTCTCAGTATTACGTATATAAAAGTAG810.11611571432667221No Hit
GCGCTTGGGCTTACATGTTTTTTAAGCCTTCCTAGGTATTATTTTCTGTTTC810.11611571432667221No Hit
TTAACAGGGGGCTGGGGACCCGCGCACCTGCAGCGCCCGCTGCTCGGCCCTG800.11468218698930588No Hit
AAAATTGGGATCACATAGCATTAGGAGAGGCAAATAAAGCTTGGTTGTCTAA800.11468218698930588No Hit
TTTGAGGGGACGTTCTCCTTTGTAAATTAGGGTGATCTTTTTTTTTTTTTTT800.11468218698930588No Hit
AATAGAGGGAGAAAAGACGGAGAATGTCTGGGTTTGAGGATATGTGGGAGGG800.11468218698930588No Hit
ATTTAGGGATCCACATGATGTGGTAGGTTTTTCTTTATTTTTACAACATGAT800.11468218698930588No Hit
ATCCATGGGAGGCCGTAATGCCTTGGCTGCTCTCAGCCCCCAAGCTGGTTCC790.11324865965193956No Hit
TTAGCGGGAAATAATCTATGTTTATTCATTCTACTGCTCTCCAAACTTCTAT780.11181513231457324No Hit
CTTGGTGGGGAAAATGGAATTTTGATAAAAAATCCCATTTTAGATGCTTTAG780.11181513231457324No Hit
CCTAGTGGTTTTTCTCTTGATACGTTCAAATGAAAAGGCCCGCATAGAAGCT780.11181513231457324No Hit
TACAGGGGGAGAAGTCAATTAATACAATCATTTTGTCTTAATTATTTAAAGT770.11038160497720692No Hit
AAGTAGGGGTCCAAGCCCCTTGTTGGACAGAGGTCACCCTGGCCATTGCACT770.11038160497720692No Hit
TAGCGCGGGGACAGCACAGGAAAAACTACCATTTATAAAACCATCAGATCTC760.1089480776398406No Hit
ATACTTGGGGACTATGTAATTACTAACCACCTGTCAGCTTCCATTTGCCCTT750.10751455030247427No Hit
GTTTGTGGGATTCAAGTATTTGATCAGTAAGTCACAGTTATCTCCAGTGCAT750.10751455030247427No Hit
TGCGAAGGGGGAGAGTGTGGTCAGGCGGCTCGGACTGAGCAGGACTTTCCTT750.10751455030247427No Hit
CACGTCGGGGGAGGCGGGGGGAAGGGACTACATAGGGTTCTAATAAGAAGCA750.10751455030247427No Hit
AAGGAGGGGGGCCTCTTGCTGTTCCCAGTTACGCCAACTCGCCCCCACCCAG740.10608102296510795No Hit
GGGACTGGGAATGATTAATAATAAACTGGGGGGAACTTTGCAAGGTCTATTT740.10608102296510795No Hit
TCCTGCGGGCTTCCATCGGGAGGTGTATTTGAGTTATTAAAATTAAAATTTG740.10608102296510795No Hit
TATCGAGGGGATCTAACTTGGGGGCAGGTTTTCCTTTGGAATATGGATAAAT740.10608102296510795No Hit
GAGTTGTGGGGTAGTGTACGTTTAGTGTTTTAAGAAGTTGCCAAACTCTTTT730.10464749562774162No Hit
GTTAAGGGGAATGAGCTTTATTGTTCTGGTGATGGGGCATAAAACACATGCC730.10464749562774162No Hit
TCAGCAGGGAGCTCCCATTGGTAAATGATGCTATTGAGACACAACAGACAAC730.10464749562774162No Hit
GCAAGCGGGCTCGCTTGGGGAGGTGATATGGTGGCTCATAAGAGCAAATTAA730.10464749562774162No Hit
TCGTTGGGGGGCAGGGCACAGTAGCTCATGCTTGTAATCCCAAAATGCTGAG730.10464749562774162No Hit
GTCAAGTCTGTCCCCAGGGGAGGTCCCCCTTTCGGGAGGAAGTTTTTAAGGG730.10464749562774162No Hit
TTCCAAGGGATACATTTTGGTTTCTTTGAGGGTCACTCATTGAGACACGCAG730.10464749562774162No Hit
AAATGTGGGGGGGTGATGGGTATGTTAATTAGCCTGATCTGCTCAGTCTGCA730.10464749562774162No Hit
TTTAGTGGGAAGGTGACATTTTGAGCGCTAATAAGCAAAAGAGCATGCAGTG730.10464749562774162No Hit
TGTACTGGGAAGAATACTGATGTGACTGTAGAAATTATTGGCACATTTTTGA720.1032139682903753No Hit
TCATGGGATTTGAAATGAGAAGTAGTATGTGTGCATATATTCATGTACGTGT710.10178044095300898No Hit
ATTGCCGGGGTATTCCAGAAACTGGGAGTGATTTTTCCATGTTTGAAGCTTT710.10178044095300898No Hit
AGAATGGGGGGTTTCCAGACATTTATGTAAAGATTAAAAAATGTATATTTGA710.10178044095300898No Hit
AACACAGGGATTAGAGAATCTATTCCAGGTGTGAGCCTCAGCAGCGATTTCA710.10178044095300898No Hit
GCAAAGGGGATTCTCCAAGGCATTATCACCAGCCAACATGATATATATACAG710.10178044095300898No Hit
CCAAGAGGGCAAAAGTATATATGTAATAGAAGACAATGGAATAAAATGTTCA710.10178044095300898No Hit
CGAAGGGGGTATGCAAGGGTCTTCATGATATGGCCTCAGCCAACTATCTTAG710.10178044095300898No Hit
ATGTTTGGGAAACTCAGAGTATGGTCATCATTTCTCTTCTGCCAGTGAGCTG700.10034691361564266No Hit
AGTTGTGGGCGATCTGTACGGGGGAGGTCCAGCTCCCTGGATAATTGCTCTT700.10034691361564266No Hit
CATCTAGGGATGTGTCTTCTCCTTGTATCAGGAATATCCAAATTCTTTGAGT700.10034691361564266No Hit
TATAGGAGGGAGCTTTGCCTGTTTTGAACTTTAAATAATGTATATTCCCCAC700.10034691361564266No Hit
TTAGTAGGGAATCCCAACACTTTGGGAGGCCATGGCAGATGGATAGCTTGAG700.10034691361564266No Hit
TAAGCCGGGAGGAGCTCTCCACAGTCAACATGATGGACGAGTTTGCCAGATA700.10034691361564266No Hit
ACTATTGGGTTTCTAGTCAGAGTCACTGTAATTCTTTTAAACCTTCAGATCT700.10034691361564266No Hit
CGTACCGGGTAAATGATCAAGAACAAAATTCATAAACTTACTTATTTGGATT700.10034691361564266No Hit
AGTTATGGGAGGACAAAACTTGGGGAATTTCTGGTGAATGTTTCAAAGAGGC700.10034691361564266No Hit
ACGCGCGGGACTATTTCCAAAGGAAGGTCAGACGTCATATGATCATAATGTG700.10034691361564266No Hit
CTAAGTGGGATTTCCTTCAGTGTCAAACATATGTAAGAGATGTTCCAAGCCC700.10034691361564266No Hit
TACATAGGGATATTGTATAGAGTACAGTAGCCCACGTGGTGTAAAACTTGAT700.10034691361564266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)