FastQCFastQC Report
Sat 31 Dec 2022
SRR5844483.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844483.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70186
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGCCGTCT2870.40891345852449207No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCGTCTAAATCTCGTATGC2310.3291254666172741No Hit
ACGCCGGGATAGCTGACCTTGAATGAGTTGTTTCATCTCTCTGCCCCTGTTT1070.15245205596557718No Hit
GATTTGGGGATCTCATTAACACAAAGAGGTCTGTGCCTGACCTAGGATCTTT1040.14817769925626192No Hit
TGCCGGGATCACGCCCTGGCACTCCAGCCTGGGTGACAGAGACTTTGTCTCA1030.14675291368649018No Hit
CAATCTGGGATAGTTGAACTTAAATATTTAAATTCAATTTTAGATTTTAAAA1030.14675291368649018No Hit
ATCTCAGGGGACTCCACTAATAGAGGAATAAATGCCTAATAAAAAGAGAGCA1030.14675291368649018No Hit
CCAAATGGGGGGGAAAAATAACTGTTTGACTTTCTGGAATATGTGATATAAG1020.14532812811671844No Hit
TGGCTTGGGGGTTCTATGGTGGGAGAAGTGAACCTTTATTATCTGGGTATTC1020.14532812811671844No Hit
TACAGGGGGAGAAGTCAATTAATACAATCATTTTGTCTTAATTATTTAAAGT970.13820420026785968No Hit
GGTATGGGGGCGATCCTTTGGCCTCGGCCTCCCAAAGTGCATGAGCCACCAT950.1353546291283162No Hit
GCACTGGGGGGTTTTCTTTAAAAATCATTTTCGTATTATGCTTTAAGTGCCA930.13250505798877268No Hit
TATGCTGGGCTCAAACAATAGCAAAAAGAACAATCCAACTTAAAAATGGCCA930.13250505798877268No Hit
TGATTAGGGGAATCAACTTTCCACTTAGTTTCCAATTTTCCCCTAGTCCACT930.13250505798877268No Hit
AGCACTGGGCAAGCATTGATTGTGAATGTCATATCAAAGATTGGCTTTCTTA920.13108027241900094No Hit
CAGTGAGGGGGATATAAAGAGTCAAGATTCAGGTGTGCTGTATTCAGGGTTC920.13108027241900094No Hit
ATCTATGGGGCAGTACTTTAAATTCTTTAAAGTGTCCTCAGTAACATCTACA920.13108027241900094No Hit
GTCAAGTCTGTCCCCAGGGGAGGTCCCCCTTTCGGGAGGAAGTTTTTAAGGG900.12823070127945743No Hit
AGTTGTGGGCGATCTGTACGGGGGAGGTCCAGCTCCCTGGATAATTGCTCTT890.1268059157096857No Hit
CTTCTTGGGATAATGAAACTATCTACAATTCTTGTTTTAGCACATCTGTTAT890.1268059157096857No Hit
ATAACAGGGTCTCTCCTCAAATCTCTGTAAGGAAGGTTTTATTGCTCTGTGA890.1268059157096857No Hit
AAGGAGGGGGGCCTCTTGCTGTTCCCAGTTACGCCAACTCGCCCCCACCCAG880.12538113013991395No Hit
CGGCAAGGGAACAGTACCTTTCTCAGTTTTTCTCTCTGAGATCACATGACGT870.1239563445701422No Hit
TGTCCAGGGGCATAACCATAACCATATTTCATAACATATTTCATCCGTTCTG870.1239563445701422No Hit
AAATGTGGGGGCAGTGACATAGCTTATGAAAGGCACAAGTGGCACCAATAGA870.1239563445701422No Hit
CACGGCGGGGCAGTGGTTCAGCAATTAGCCATCTAAACACAAAATCTATAGT860.12253155900037044No Hit
CAATGCAGGGAAACAGTACATGGTAACCCTTGAAAGGTTTTAAACTTGTTTC860.12253155900037044No Hit
TGAGTGGGCAGAGCCTCCGACTGCAGAACCCCTGCTTCCTAAGTGTTCACTC850.1211067734305987No Hit
GTACATGGGAGAAAATGAGTTGATTTTTAGAAATGTTTTTAATTGTAAAGAT840.11968198786082695No Hit
GTGTCAGGGCTGGTAAAAATATTTCCTAGTGATATTTGTGATTTCTTCTTTG830.1182572022910552No Hit
TTATCTGGGAGAGATGAGCCACTGTGCTCAGCCCTTTCTGTAATATTTTATT830.1182572022910552No Hit
CTCAGAGGGCAAATAATTTCCAAATATTGCATTCATCACATCCTCAGGGTAA820.11683241672128344No Hit
CCAAGAGGGCAAAAGTATATATGTAATAGAAGACAATGGAATAAAATGTTCA820.11683241672128344No Hit
CTTACTGGGGGGTAAATACATAAAGGAAAAATCAAAAATGTGCATATTTTCT820.11683241672128344No Hit
CATATAGGGAATTAGCATAAGATATATAAAAGCTTTATGTGGTCCTGGAATG810.1154076311515117No Hit
ATAGGTGGGCTTGCTGGCTGATGCTGCTGTCTCTCAGTGGTTTATGATGAAG810.1154076311515117No Hit
TAGCGCGGGGACAGCACAGGAAAAACTACCATTTATAAAACCATCAGATCTC810.1154076311515117No Hit
CATCTAGGGATGTGTCTTCTCCTTGTATCAGGAATATCCAAATTCTTTGAGT800.11398284558173995No Hit
AACTTTGGGACAAGATGACCCAAATGTTAGGATTGAAGTAGACAAGGACTTT800.11398284558173995No Hit
TTTGAGGGGACGTTCTCCTTTGTAAATTAGGGTGATCTTTTTTTTTTTTTTT800.11398284558173995No Hit
TAGCGTGGGCATCATTAAAATCTCTTTCCTGACCTTTGCTTTCTAGGTGATT800.11398284558173995No Hit
ACTGAAGGGAAAGAGGACATAGACTATAGGCATTTTAAAGATGAAGAAATGA800.11398284558173995No Hit
AAGTAGGGGTCCAAGCCCCTTGTTGGACAGAGGTCACCCTGGCCATTGCACT800.11398284558173995No Hit
TTAGTAGGGAATCCCAACACTTTGGGAGGCCATGGCAGATGGATAGCTTGAG790.11255806001196819No Hit
CATAGCGGGAATTTGGAGGTTAGGACTTCCTATGTGGAGGGACACAAATATT790.11255806001196819No Hit
TATATAGGGGAGCTTCCAAACCCAGGGCTTGCGCTTGCCTTTGCCTCTTCCA790.11255806001196819No Hit
TATGCAGGGATCCTCCAAATTCATTTTTGTATATGGGGAAATTATAAAGCTT780.11113327444219644No Hit
AACTGAGGGACAATTTAGCAGTCATTCAAAAGATGTTCTTGACTAGAACATC780.11113327444219644No Hit
TGTGCAGGGGTCCCACTTTGTTACACAGTGGAAATGATAAATCTAGGTAGGA770.10970848887242471No Hit
TAACTAGGGGTGAGCACACTAAAAGCGAAAAATAAATGTGAATAAAATGTAC770.10970848887242471No Hit
TCAAACGGACATATGTATTTTTTTTTAATTCTACTTTGGGAATGTCATGCTT770.10970848887242471No Hit
CAATCCGGGGTAACACACCAACGTACTGTGACCTAGGAAAGGCTGCTAAGGA770.10970848887242471No Hit
ATTTAGGGATCCACATGATGTGGTAGGTTTTTCTTTATTTTTACAACATGAT770.10970848887242471No Hit
GAGTTGTGGGGTAGTGTACGTTTAGTGTTTTAAGAAGTTGCCAAACTCTTTT760.10828370330265295No Hit
GGATATGGGTCTTGTCACGGGCTTCAGCTGCTTGGCTTCCTGAAACCAGAGC760.10828370330265295No Hit
TCTGATGGGGAAAATGAAAACACAACATACCAGAACTTATGGGATGAAGTTA760.10828370330265295No Hit
TGCTGCGGGGCAAAAACATGTAAATATAACATTCTCCTCTTGAGTTTACTAA760.10828370330265295No Hit
TGTTATGGGAAGACATAAAGAAAAATGCAATAGACACTCCCAACCATGATAT760.10828370330265295No Hit
AATTATGGGAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGCC760.10828370330265295No Hit
TACCGTGGGATAATAAATTAACCCATACAGATCTGAAGCCTGAAAATATTTT750.1068589177328812No Hit
AAAAAAGGGCACTACTCCCGGCTAATTTTTGTATTTTTAGTAGTGATGGGGT750.1068589177328812No Hit
CGACTGGGGGGATGTTCGTTGAAAATATATTAGACATTCTCCCTGAGGTTAA750.1068589177328812No Hit
TATCTGGGAGGACAAATCTTTCACCTGTTCCTTCATCCTTCAGTTCATCCAT750.1068589177328812No Hit
CTTGACCGGGATTCTGGAGAAATAAAGGCTTGATAGAAGAAAACAAGTCACT750.1068589177328812No Hit
GCGCTGGGTACCCTATTTAATAAAGCATCATGAGTTTTTTATAACTAGTAAA740.10543413216310944No Hit
TAAAGGGTCGTGGAAGAAGGTCCATCAATATCGTAGAGCACAGAGAAAACTT740.10543413216310944No Hit
TTAGATGGGATCTTTAATTAATGAGGTAATTCGGGCAAAGAGTAGAATTTAA740.10543413216310944No Hit
TAAGCCGGGAGGAGCTCTCCACAGTCAACATGATGGACGAGTTTGCCAGATA740.10543413216310944No Hit
GCGTGAGGGAGAGATAAGGCCATTATTTAAGGTAGAAGTATCTTTAAAATTA740.10543413216310944No Hit
AATGACGGCACAGACATCTGGGGGAAGAAAAGGAGCAGGAAACTACCCCGCA740.10543413216310944No Hit
ACTATTGGGTTTCTAGTCAGAGTCACTGTAATTCTTTTAAACCTTCAGATCT740.10543413216310944No Hit
AGTTATGGGAGGACAAAACTTGGGGAATTTCTGGTGAATGTTTCAAAGAGGC740.10543413216310944No Hit
TCCGAAGGGACGTTGGATCATCACACAGGTAGGCGATCTGAGCAGAACACCT740.10543413216310944No Hit
GGTTACGGGAGAGAAAAAGCAAATTAGAACAGTTAGATTTACCCAGTCATAC730.10400934659333771No Hit
TCATGGGATTTGAAATGAGAAGTAGTATGTGTGCATATATTCATGTACGTGT730.10400934659333771No Hit
AGCGTTGGGGTCTTCACAAATATCAAAACAAAATGGAGGAAAACTAAGCATT730.10400934659333771No Hit
CGCCTAGGGGTACTATGCAATGAATGGCATAGGGTTACATTTTGGCCTCACT730.10400934659333771No Hit
GCGCCCGGGATCCAGGGGGGTGACTCACATTTGTGATTTGTATATGTTGAAC730.10400934659333771No Hit
AAATGTGGGAGGTGATGCCACTGGGCGTGATGCACGGCTCCCGCATCAGCTC730.10400934659333771No Hit
CACGTCGGGGGAGGCGGGGGGAAGGGACTACATAGGGTTCTAATAAGAAGCA730.10400934659333771No Hit
CCTAGTGGTTTTTCTCTTGATACGTTCAAATGAAAAGGCCCGCATAGAAGCT730.10400934659333771No Hit
AACGGTGGGGGGAAAGGGTTAAGAGAACTCCAAATTTTTGTTGACTTGATAT720.10258456102356596No Hit
ATTACAGGGTGGCTGCAACTTCCACTTCCTGTGGGAGAGCGCGGCTGCTTGC720.10258456102356596No Hit
GGGACTGGGAATGATTAATAATAAACTGGGGGGAACTTTGCAAGGTCTATTT720.10258456102356596No Hit
CCACTTGGGATTACCAGAAGCTCATTATTTCTTCAAATATTTCCTCTGTTTT720.10258456102356596No Hit
TTGCCGGGGACTGTGAATAGTTGTGTGTTTGTTCTCATGCCGCTAATAAAGA720.10258456102356596No Hit
TATTATGGGGGAGGCTGCGTGTGATGCACTGATTCATTGCTGTATGCAATTT720.10258456102356596No Hit
CGTACCGGGTAAATGATCAAGAACAAAATTCATAAACTTACTTATTTGGATT720.10258456102356596No Hit
GGTTAGGGATGACCTGAAGGGAGAATTCAAGAAGGATAGGGATATACCTTTT720.10258456102356596No Hit
AAATCGGGGAATTGTGATAGATCAAGAAAGCAAAAAAACAAATACAGAAAGT710.1011597754537942No Hit
GGTCTAGGGAACTTCATATTGCTGAAGACATACACTAAGAATTTATGTAGAT710.1011597754537942No Hit
GCAATAGGGAGAAGCAACTTCTACACATGAAGAATCTAGCTGGTTAGTGCCT710.1011597754537942No Hit
TGCGTTGGGTAAGGAACTGAGGAGGCTCTTCCTTGTCCAGGACCTGGTGGAT710.1011597754537942No Hit
GCCAATGGGATCTCAGTAATACGTAATAAGAGAGTTCTTATGAGTGGAATGT710.1011597754537942No Hit
TGATCAGGGCCCCCACCCCATGTAACATCGATACAATGCTACTATATAATAT710.1011597754537942No Hit
GTACGGGTAACCATAAAAACGTTGCTTTTGAACACCAGTGCTGAAAAAAATA710.1011597754537942No Hit
CGTTCCGGGGTTTTCTATTGGTATGTCAATTCGATAATGTACATTGATTTTA710.1011597754537942No Hit
GTTTGTGGGATTCAAGTATTTGATCAGTAAGTCACAGTTATCTCCAGTGCAT710.1011597754537942No Hit
CTCTTCGGGATATTACTATTGGGAATCTAAAATGATGTAGCTACTGAAGTTA710.1011597754537942No Hit
GCCAACGGGATAATTTATATGTAAAAATAGGTAACTTTTATGATACTATTTT710.1011597754537942No Hit
GAAGAGGGAACAAGATGAGAGCCACTCGGGAAAAGAGCCATAGTCAACTGGG710.1011597754537942No Hit
TTGCTAGGGTACTTAGAGTCAGTATTCCTTTTTAATAATGACTAATTTTTTT710.1011597754537942No Hit
AGTGCTGGGTATTGGATGAAATCCCAAGGGAGATGGACGTAAGAAGAGGTTA710.1011597754537942No Hit
AACGCCGGGGCATTACTTCGAAGCACGAAAGTGCTTTTCCATTATCAAAATT710.1011597754537942No Hit
TATCGAGGGGATCTAACTTGGGGGCAGGTTTTCCTTTGGAATATGGATAAAT710.1011597754537942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)