FastQCFastQC Report
Sat 31 Dec 2022
SRR5844262.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844262.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123012
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCCCATGGATCTCGTATGCCGTCT5790.47068578675251194No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCCCATGGATCTCGTATGC5030.40890319643612No Hit
CAATTTGGGCAGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGCACCAG1610.13088154001235652No Hit
TTTCACGGGTATCAGTTGATTGTTATCTCTCGGAAAAATGTACCTTTGGTTA1570.12762982473254642No Hit
AAAAACGGAATGTTAAATCATACCCCTGTGAGAAACAGCTTTACCAAGTAAG1540.12519103827268882No Hit
AGCACGGGGATGATGAGCATGATAAAATGAATTATCTTACACATTAATTGAA1500.12193932299287874No Hit
CGTCACGGGGGAATTAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTGTGTGG1490.12112639417292623No Hit
TCCGTAGGGTATTACATTTGCTTTTAAATAGGCATGATGTGGAAATACCATC1490.12112639417292623No Hit
AAGTTCGGGCAGATGAATCAAAATTCAATATGTACCGGCTCTACTTTGGAAG1470.11950053653302117No Hit
AAACTTGGGGAACTCCTGACCTCAAGTGATCCACTCACCTCGGCCTCCCAAA1470.11950053653302117No Hit
CTTATACACATCTCCGAGCCCACGAGACTCCCATGGATCTGTCTCTTATACA1460.11868760771306865No Hit
ACAATGGGGAAGAATTTGGAGTTTTTCAGGGCAATTCAAATGACCTCATTTT1460.11868760771306865No Hit
CTCCATGGGCAATAGGGATATGAATTACATAAAAAGAATTTTGTGTAACTGG1440.11706175007316359No Hit
TTCAAGGGTCAGCTTTTGACTTTGAATCTCATGAAAAAAGAAAATTTAAAAA1430.11624882125321108No Hit
CAATTAGGGATACCCTGACAACCTGGAAGATTGCTTCAGTCCTATTTCCTGT1430.11624882125321108No Hit
TGAGCTGGGCAACAGAATATACATTCTTCTCAGCACCAGATCACACTTATTC1410.11462296361330603No Hit
GAAGTTGGGATATTGAAACATTCTATCCAGTAGCTACAGAATACCCATTCTT1410.11462296361330603No Hit
CTTAACGGGAGAACAGAAGTACAAATGTGAAAACTTACAAACAACTTAGTTT1380.11218417715344844No Hit
TTGAGAGGGAAGAGCAGAGATATTGTGTTGTGTAAAATTAAGACTTAAAGAT1380.11218417715344844No Hit
TGTGCGGGTATCAGTTCAAACGAGACTTACTACACTGGGCTATTTCTTTTTT1370.11137124833349593No Hit
TGCCGAGGGTCTTCAGTACAAAGAGTATCCAAAAGCTAAGTTTTTGTATTCC1370.11137124833349593No Hit
GCGCAGGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1360.11055831951354339No Hit
CAAAAAGGGATAGAGGTAATATGGAAGTCATAAAAGTAAATTAAGGGAGAGA1360.11055831951354339No Hit
GCTGCAGGGCAACTTCACCAGGTTTCTAAATGTGTTTTAGAACCAAAATACT1360.11055831951354339No Hit
GCAAATGGGGAAGGTGGTTTATTACAAATAAGCACACTAACCCCTCGGAAGT1350.10974539069359088No Hit
GCCGAGGCTGGAATTGCCGGGGAGGCCCAAAGCAAGAAGCCAGTGTCCAGGC1340.10893246187363835No Hit
CTATGTGGGGCACAATTAAGTTTAAAAATAAAGAAGTGAAAGTTTCAGACTA1340.10893246187363835No Hit
AAACTCGGGGCATTTTCTGGTCCTAGTTTCCTTAAATTCTGATGCAAGCAGA1340.10893246187363835No Hit
GTGACAGGGAAAGCAGGTTTTTATATGTAAACAGTGAGAAAAGAAAGGCTAA1340.10893246187363835No Hit
AGCAAAGGGAGAGCTATCTAAAAGGGAAGCCCAGGAAGAGGTATCCAGAAAT1330.10811953305368581No Hit
TGTTCCGGGCAGTTGACGTTTTTCTGTTGAACTGATTTTTCTTTTTTCCAAT1330.10811953305368581No Hit
GTAAAAGGGAACCTCACAGAATGGACAGTGAACAGCCGGTGGGACACAGGCA1320.1073066042337333No Hit
TGCTCGGGGGACCACGGATTTGCATTGCCGAGGACGGGACCCCAGGGCAGCG1320.1073066042337333No Hit
CATATGGGGCCAGTAGGTGCTCAGCAAATGCTCCCATCCATCTGGGAGTATA1320.1073066042337333No Hit
GGGCATGGGACCATTCTATAGGAAATGAAAGGCAGAGAAGTAAAGTGATTTG1320.1073066042337333No Hit
TATTAAGGGTGTTATTTGATTTCAGGTTTCACAACAAACCAAAACTAAAAGT1320.1073066042337333No Hit
TGATATGGGAAGGCCCTGAGTGACCATCATGTATACCTGGAGGGGACCCTGC1310.10649367541378076No Hit
AGGTCCGGGTCCAGAAGAGATTGATATATGACTGAATGGACTAAGAGGGAAC1310.10649367541378076No Hit
GATACTGGGACTCAAAGAAGATGGTACACTGAAGAAAGAAAAAGTCAGGAAG1310.10649367541378076No Hit
TTCGCCTGGGATCCTGTTAACAATAAATAGTCCCTTAGCAATTACTGTACTC1310.10649367541378076No Hit
CTCTTCGGGGCTATTACTTACAAAATTCATCAATTACTAGTCCATGAAAAAT1300.10568074659382824No Hit
CAGCCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1300.10568074659382824No Hit
ATTGCAGGGATTGGAATTTTGATAGGGATTGCACTAAATCTGTACTTTGGGT1300.10568074659382824No Hit
TAGAAGGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1300.10568074659382824No Hit
ATCTTAGGGCTCATTCAGAAATTTTCTACTGTGGTTTGTGGATTTCTCCAGG1290.10486781777387573No Hit
ATTAATAGGTGGTAAAAATCTATGTATAAATAAATCTAAAAGAGCCCTTTTT1290.10486781777387573No Hit
ACAGCCGGGCGGTTATTATTATCATTTCTATTTTGTAGATGAGGAAGTTGAA1290.10486781777387573No Hit
GACCTAGGGTACAAATGTCCTTCCTCCTACTTTAGATATCACGTAGCTGTAA1280.10405488895392319No Hit
CAGAATGGGCAGATGGGCCATTTTAGGATCATTTTTGATATTCATTGCAATG1280.10405488895392319No Hit
TATTCGGGGATATGGGATTCCTTAGAATCCATCCTCCTTCCCAAGCATTTCC1280.10405488895392319No Hit
AAAGCAGGGCTAGGGAAGGGAACCAAAAAAATAAACCCTCGTTCCACAGAAG1270.10324196013397066No Hit
GTTTGCGGGAAAAGGAAGGATTGGCATTGTGTCCAGATCTGGCACCCTGACT1270.10324196013397066No Hit
ATCTACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1270.10324196013397066No Hit
TGAAACGGGAGGCAGAGGTTGGAACAGTTTGGAGCGCTCAGAAGAAGACAGG1270.10324196013397066No Hit
AAATATGGGATCCATCCTTGATTTTTGTTGTTGTTATAGATTGGGTAATAAA1270.10324196013397066No Hit
AAATTTGGGCCGATCTCAGACGAGGGATATAAAATAACTTCAACGTATGTGA1270.10324196013397066No Hit
CAATAGGGACCAAGAGATTTTGAACTATCCAATTATGACTGCTATGGAAAAC1270.10324196013397066No Hit
ACGTAGGGGGCATTCCACCTATCGTTATGACGCAATGTCTATTTGAAATATT1260.10242903131401815No Hit
ACTGCTGGGGCCTCATTGTGTCTCCCGTGCATGCTCTGCAGCATTGAAGTAT1260.10242903131401815No Hit
AAGCTGGGGGTCTCCAAGCCCACTTGAAAAGTCACACTGAAAGGATGCAAAT1260.10242903131401815No Hit
CAAAGAGGGGTGGAAGGTTGGTTTTTAAAAAGTATGGTAGGCAAAGGACTAA1260.10242903131401815No Hit
TATGACGGGATCCAAGCCGACTGATGACTGGAGAGGATGGCTACTATTTCAC1250.10161610249406561No Hit
GCCTCCTGGGTTCAAGTGATTCTTCTGCCTCGGCCACCCGAGTGGCTGGGAT1250.10161610249406561No Hit
ACCCAGTGGGCGAAAGATGAGAGTGTACTTTTACCAAAAGTTATCTAAGCCT1250.10161610249406561No Hit
ATACTTGGGATCAACACTGGAAAAGAGACTTCACTATTTTCGAAATTATCCC1250.10161610249406561No Hit
CTTAACGGGGGGACAATGTACTCTTCTCATTAATGAAGCATCTAAAACACCT1250.10161610249406561No Hit
TTTGCAGGGATTTTTCAAAGGAGTGAATGAGGTTAAAATCAAGATTTTGAAT1240.1008031736741131No Hit
ACTGACGGGAAGTAAAGGAAAGAAGAAGCCTTTCTGCATTTGCCCATATAGT1240.1008031736741131No Hit
CAAAAGGGGATACTGTTAAGTTTTCTCTCCAAGGGGCTGCATCAATTTACAC1240.1008031736741131No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)