FastQCFastQC Report
Sat 31 Dec 2022
SRR5844094.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844094.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120152
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC11950.9945735401824356No Hit
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT9980.8306145548971303No Hit
TACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGG1650.13732605366535722No Hit
TAGCGAGGGATCTCAAGTAACTAGAGAAACAAGAAGAAACCAAACCTAAACC1540.12817098342100006No Hit
GTAGAGGGGCATCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTG1490.12400958785538317No Hit
ACTTGAGGGGAAATTATTCTTGTCTGCAAACGATATGATCATGTATTTGGAA1420.11818363406351955No Hit
AATCTAGGGAGGATTAAAATGTGTCCAGTCTTCTGGCTATACCCCAGAATCT1420.11818363406351955No Hit
CTATGTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1360.11318995938477928No Hit
GGACGCGGGTCCTAGCACTTTGGGTGACCAGGGCGGGAGGATCCCTTGAGCC1330.11069312204540914No Hit
CGTCGAGGGGCCAAAAAAAGTTTGAAGCGCTCTATTCTCAGACATGCTGTAT1300.10819628470603902No Hit
GGATTAGGGATCTGTATTGTTATTCTTTTCGGGTTCTGAAATGGCTTGGAAA1300.10819628470603902No Hit
TAAAATGGGCGAATCTTTCCGAAAGATCCTTCAACCTTTCTGGAAGAATCTA1300.10819628470603902No Hit
TGTTATGGGACTGAGCCTTTAGGACTGGAATCCAAGGAAGAAGGGATTTGGG1290.10736400559291563No Hit
TACCAGGGGATAGCAATTTCCTTAGAAATACTATTGATAAAAGAGTTCTTAT1270.10569944736666889No Hit
AACCGCGGACATAAAAATCAGTTTTTCTTCTACACACTTGTAATGAACAGTC1270.10569944736666889No Hit
TCTGGTGGGCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTT1270.10569944736666889No Hit
GCTTAAGGGATCCCTGGAAACCTTTGAATATAGACAATGAGGCTATGCTGGG1260.10486716825354551No Hit
TTACCCGGGAGACATGGATGTTGTGAATTCCTCTTTTGAGAGGTTTTCAAGA1260.10486716825354551No Hit
AAATACGGGGAGGTTTCAGTCATCCAAGGTCAACCACAATACAAAAATATTA1260.10486716825354551No Hit
TTCTATGGGGAAAGAAAAAGTCTGATTCTAGAGGAATCTGTAAAAAAATTGA1250.10403488914042212No Hit
TTGTCGGGGAACTCACAGCTGGATCTAAATTGAGAGAAATGGAGTCAAATTG1250.10403488914042212No Hit
TTAGCAGGGACGTATCCTATATTTTGAATTTTATACTAGTTTTTCAAAAGTA1240.10320261002729875No Hit
TGTTGCGGGCTGAAAAATATTGTTGCAAAAATCCTCAACAAAAATATTAGCA1230.10237033091417538No Hit
CAGAGGGAGGTGCAGTGATGCCTAGTTTTAATGTTAACTTACATTTGAATGA1230.10237033091417538No Hit
CAAATAGGGGATTGAAACACATATACTTCATCAAAATCTTTAAGTTTATAAT1220.101538051801052No Hit
GATCCTGGGCATATGGGTCTTGTAAGTAACATCCTGCTCCGTGATACTTTGT1220.101538051801052No Hit
TGATATGGGAGCCCTAACTGAATGGCACTAATAAATATGGAGCAGGGAACTG1210.10070577268792862No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)