FastQCFastQC Report
Sat 31 Dec 2022
SRR5844093.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844093.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118784
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC10820.9108970905172413No Hit
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT9800.8250269396551725No Hit
TACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGG1770.1490099676724138No Hit
TAGCGAGGGATCTCAAGTAACTAGAGAAACAAGAAGAAACCAAACCTAAACC1720.14480064655172414No Hit
ACTTGAGGGGAAATTATTCTTGTCTGCAAACGATATGATCATGTATTTGGAA1410.11870285560344827No Hit
CAAAGGGGAATTTACTAATTTGCATAAAAGAAATATATAATTTGCAAGCCTT1380.11617726293103449No Hit
GTAGAGGGGCATCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTG1360.1144935344827586No Hit
CACGCGGGGAGGCTGAGCCGCTGCACCCATTCTCCACTCATACTTATATCCC1310.11028421336206898No Hit
GGATTAGGGATCTGTATTGTTATTCTTTTCGGGTTCTGAAATGGCTTGGAAA1300.10944234913793102No Hit
TCTCGGGGGCAGTGAGACATCCAGGGCTAGCTGGATTCTGCCTGTTTGTATA1290.1086004849137931No Hit
GCCTGGGAGACAGAATGAGACTGCATCTCGAAAAAAGTCTCAGTTTTGTGAC1290.1086004849137931No Hit
CGCGATGGGATATTCTTGTCTGTGAAAGGTATTCTATTTTATATTCTAATTT1280.10775862068965517No Hit
TCTGGTGGGCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTT1280.10775862068965517No Hit
TTACCCGGGAGACATGGATGTTGTGAATTCCTCTTTTGAGAGGTTTTCAAGA1260.10607489224137931No Hit
TTTCTAGGGGTACCAATGTCTCTCATCAAATAGTGTACTCTTCTGTCATCTC1260.10607489224137931No Hit
TTAGCAGGGACGTATCCTATATTTTGAATTTTATACTAGTTTTTCAAAAGTA1260.10607489224137931No Hit
CACAAGGGGCGTTGACTGGGCCATCCAGGTGTGCGGAGGTGCTGGTGTTTCC1250.1052330280172414No Hit
CTAACTGGGCTTACAGCAAGCCCATCAGAGAATTCGTGACTTAGAAGATAAA1250.1052330280172414No Hit
TGATATGGGAGCCCTAACTGAATGGCACTAATAAATATGGAGCAGGGAACTG1240.10439116379310344No Hit
TTTAGCGGGCTCTTCCTTCTGGAATAGTAAACTTTAGAGAGGAAATTTGTGA1230.10354929956896551No Hit
TATCTAGGGACTTTTGAAGTGCTGCTCTTCCCTTATGCCAACCTCCATTTCT1230.10354929956896551No Hit
CGCTGGCAGCAATTCCCTTGATAAAATGGCTTGGTTGAAAGCTTGACCTGTA1220.10270743534482758No Hit
GCTTAAGGGATCCCTGGAAACCTTTGAATATAGACAATGAGGCTATGCTGGG1220.10270743534482758No Hit
TAGCCGGGCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTG1220.10270743534482758No Hit
AAGCTCGGGGATTAATGGAAGTTGTAATTTCAAACTCTGGTTGTCAGGTACA1220.10270743534482758No Hit
AACCGCGGACATAAAAATCAGTTTTTCTTCTACACACTTGTAATGAACAGTC1210.10186557112068965No Hit
GTACATGGGGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGG1210.10186557112068965No Hit
TTCTTAGGGATCAAATACGGGAGCCAGGAATTGGTTTCTTCCTTGCCATTTA1210.10186557112068965No Hit
GGTTATGGGGTTGATCAAAAGCCAGACACAAACTTTAACAAACGGCATGCTT1210.10186557112068965No Hit
TGTTGCGGGCTGAAAAATATTGTTGCAAAAATCCTCAACAAAAATATTAGCA1200.10102370689655173No Hit
GTGCATGGGGAATTGATAATAGAAAGATTGCAAGAAAATCTTCAAACACTTG1200.10102370689655173No Hit
ATGTGTGGGACTGATCCAATTTTCATTATTCTTGAGAAATGTCAGCTTTGCC1200.10102370689655173No Hit
CAAATAGGGGATTGAAACACATATACTTCATCAAAATCTTTAAGTTTATAAT1190.1001818426724138No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)