FastQCFastQC Report
Sat 31 Dec 2022
SRR5844092.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844092.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120923
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC10990.9088428173300365No Hit
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT9910.8195297834158929No Hit
TACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGG2060.1703563424658667No Hit
GTAGAGGGGCATCAAGTTTGATGATGATTTCCATATTTATGTCTACGATTTG1760.14554716637860457No Hit
TAGCGAGGGATCTCAAGTAACTAGAGAAACAAGAAGAAACCAAACCTAAACC1690.13975835862491007No Hit
TGTTGCGGGCTGAAAAATATTGTTGCAAAAATCCTCAACAAAAATATTAGCA1530.12652679804503691No Hit
TTAGCAGGGACGTATCCTATATTTTGAATTTTATACTAGTTTTTCAAAAGTA1420.11743010014637414No Hit
ACTTGAGGGGAAATTATTCTTGTCTGCAAACGATATGATCATGTATTTGGAA1370.11329523746516379No Hit
TTCTATGGGGAAAGAAAAAGTCTGATTCTAGAGGAATCTGTAAAAAAATTGA1330.1099873473201955No Hit
ATGTGTGGGACTGATCCAATTTTCATTATTCTTGAGAAATGTCAGCTTTGCC1320.10916037478395342No Hit
CGCTGGCAGCAATTCCCTTGATAAAATGGCTTGGTTGAAAGCTTGACCTGTA1270.10502551210274307No Hit
ATGCTGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGA1260.10419853956650099No Hit
TGATATGGGAGCCCTAACTGAATGGCACTAATAAATATGGAGCAGGGAACTG1260.10419853956650099No Hit
AACATTGGGAATAAATGGAACATCAGTTTGGTTCCTTCAGCTATTAAAAAGG1260.10419853956650099No Hit
AGTCCGGGGATATTTTAAAAATGTAGGATGCTTTAAATTTTGTTCCCAGAAA1250.10337156703025892No Hit
TTAACGGGGAACAGTGTAGCAGTATCATCACAGGAGGGGAAGACAGACAAAT1240.10254459449401684No Hit
GCTGCAGGGGACTAATCACCACCCAACAATGACTAATCAAACTAACCTCAAA1240.10254459449401684No Hit
CGCGATGGGATATTCTTGTCTGTGAAAGGTATTCTATTTTATATTCTAATTT1240.10254459449401684No Hit
TCTGGTGGGCATTCTCAACCCCCTGACAAAACACATAGCCTACCCCTTCCTT1240.10254459449401684No Hit
TTGATCGGGGGTTTAAAAAATAAAAAGGTTTCTCTTAACAGTATTTCCAGTG1230.10171762195777477No Hit
TGGTCTGGGCAATCTCTAATTACAGGTTTGTATAATTTTACTCACCTTCTAA1230.10171762195777477No Hit
TGTTATGGGACTGAGCCTTTAGGACTGGAATCCAAGGAAGAAGGGATTTGGG1220.1008906494215327No Hit
CAAAGGGGAATTTACTAATTTGCATAAAAGAAATATATAATTTGCAAGCCTT1210.10006367688529064No Hit
TAGCCGGGCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTG1210.10006367688529064No Hit
AACCGCGGACATAAAAATCAGTTTTTCTTCTACACACTTGTAATGAACAGTC1210.10006367688529064No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)