FastQCFastQC Report
Sat 31 Dec 2022
SRR5844074.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844074.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131434
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT6560.4991098193770257No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC6140.46715461752666737No Hit
ATGAAAGGGAGGCTGAGGCAGAGAGGATTTGTGAAATTAGAGAGACGGTGTG1640.12477745484425642No Hit
CATAGCGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1600.12173410228707945No Hit
AGCTACAGGGGAAGATGGGAAATGTAGTTTCTGGCTAAATATCAGTGTATAA1560.11869074972990246No Hit
TATTGCGGGATCTCTGTATCAAATCACAAACTTAGCTGCCTACTTATTTACA1530.11640823531201973No Hit
CGTAAAGGGGTATAAATAGATTTAAAAAATAAAAGTTTTAAAAAATGTACAT1450.11032153019766575No Hit
GCTGATGGGATGAACCAGAAATCCTTACATTTATTTTCGGTTGATTTTGACA1440.1095606920583715No Hit
CAAAGCGGGTGTACGGACTTTGAAGTGATTCAGTTTCCTCTACGGATGAGAG1440.1095606920583715No Hit
TTTAATGGGAGGATAAGAACCTCACTTCCTTACTCCTCCAAAAAGAAGTGGG1410.10727817764048878No Hit
CACATGGGGGATTACTGCTCCTCTGCTCTAAAATTGGTGTTTGGGTGATCAG1390.10575650136190028No Hit
AGAAAAGGGATGCCATAAACCTCAAGTTACTCATTTTATTTTGTTTTCATTT1370.10423482508331178No Hit
GACATAGGGCAAGATCAAGGTATCAGCAAGGTGGTTTCTTCTGAGGCCTCTC1360.10347398694401752No Hit
TGTCATGGGTATTATCCATTCTCACTGTCAGAAAACAAGATGCTTGGGGCTC1360.10347398694401752No Hit
GTGCGGGTGGGTCAGATTTCCCAGTTCTTTGCAATCCTAATAAATTCTGTTT1360.10347398694401752No Hit
GCCTCTGGGCACTGCTTGGGTGATGGATGCACCAAAATCTCAGAAATGATCA1350.10271314880472328No Hit
ATAGTTGGGACTACATCTCAAAATTAATGTTGCCAACTTAATTTTGTGCATT1350.10271314880472328No Hit
AGCAATGGGAAGCTAGCTTTACCAAAGAGAAATAGTGTCATAGAAGAACAAA1350.10271314880472328No Hit
TTAGGGGGGGTGCTCGTTTTGTTGAATTGGTACATCAACAGAAAACTCCAAA1330.10119147252613479No Hit
ACAACTGGGATTTTATTTCTGTCCTTAAAACACACATACAAAATTACAATAT1330.10119147252613479No Hit
GAACAGGGGTCCTGATTCAAGAGAATAGTAATATTTTCATAAGCAGAAATTT1330.10119147252613479No Hit
ACTTCCGGGGTATTATGATGGGATAAAAATGGAAGTTTCCTTCTGAAGTCTT1330.10119147252613479No Hit
GTAGTAGGGATATATTAAGACTGTAGCTGAATTGCACATGAAATCAGATTGC1320.10043063438684055No Hit
GCTCCCGGGGAATGTTTTAATGAAGTTCTCAAATTAACTTCCATTATAATGA1320.10043063438684055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)