FastQCFastQC Report
Sat 31 Dec 2022
SRR5844073.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844073.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108611
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT6190.5699238566995977No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC5840.5376987597941277No Hit
TTTTCAGGGAGAAGCTGGAGAGCCAGTCACATTACATCCAAAACTGTATTGG1470.13534540700297393No Hit
CGACTAGGGGTTTAATTTCTTAGTTCATAAGACTTGATCTCAACCCACTTTT1300.11969321707745993No Hit
TTGTTGGGGAAGCCCAGCGATGAGCACAAGACCGACCTCAACCCCGACAACC1280.11785178296857593No Hit
TATGCTGGGATTGCATTTCTGAACAAAATCAAGAATTCGTTGCCAGGAAAGA1230.11324819769636593No Hit
GGCTCTGGGATGTCAGTGATCATTTTTTGTCATTTTTCTGAAAATTAGTTGA1180.10864461242415593No Hit
CGCGAAGGGTGCCGTTCCCTGAGCTGGAGCGGGTGCTGCAGGCGCCGCCGCC1170.10772389536971394No Hit
TGTCTAGGGAGGAGATAGAGAAGAAATCGTTCAGAAAATAGAAGGAAAAACA1140.10496174420638793No Hit
TATGTGGGGCATTTCAGCTATCTGAGTCTTTCACTGCTCTCTGCTTAATATC1130.10404102715194594No Hit
GTCGCGGGGATCGAAGAGGAAATTCAAATGGCCAAGTGGAAAGATTCCCAAA1110.10219959304306195No Hit
CAGCATGGGGAATGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACGCAGA1110.10219959304306195No Hit
GAACAAGGACCTTGACAACTGTTCATAAATTTTCAAAGACATCGCTTCTAGT1110.10219959304306195No Hit
GCTGGCGGGCAGTAGCTTCAAGAAAGTCTAAATTGTTAATTTATGGAATTGG1100.10127887598861994No Hit
TAGTGAGGGATTTGAATAAGTTTCATAATTTTAAGTATTTGAATTAAATTTT1090.10035815893417793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)