FastQCFastQC Report
Sat 31 Dec 2022
SRR5844072.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844072.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108953
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT5620.5158187475333401No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC5210.4781878424641818No Hit
TATGCTGGGATTGCATTTCTGAACAAAATCAAGAATTCGTTGCCAGGAAAGA1310.12023533083072517No Hit
CAGTTGGGGTCCTTTTACTTAGGTAAGAATCACATATTTCAGGGTCTTACAT1200.11013923434875587No Hit
CGACTAGGGGTTTAATTTCTTAGTTCATAAGACTTGATCTCAACCCACTTTT1190.10922140739584958No Hit
ACAGTGGGGGTCTAAAACAAACAAACAAACGAAAACAACAACAACAAAAACT1140.1046322726313181No Hit
TTCTTCGGGGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGG1140.1046322726313181No Hit
TCGGATGGGTATTGTGAAAATAGTAATAAAAATAAATTTCTGGCTTTTAAAA1140.1046322726313181No Hit
TACGATGGGTAATCAGAATAAAATTAATTGAAATCCACATTAATTTGCCCAT1130.1037144456784118No Hit
GCTGCAGGGGATTGACGTCCAGCGAAGCGAGGAGCAGCGATGGACGGTCGGG1100.1009609648196929No Hit
GAACAAGGACCTTGACAACTGTTCATAAATTTTCAAAGACATCGCTTCTAGT1100.1009609648196929No Hit
CTTAGTGGGTAGAAGTGACAGCGCTGTATTCATTTGAAGGACAGCAGCCTGG1100.1009609648196929No Hit
TTGGACGGGGATCTCAATCGGGGAACATCACGGAGCTGAATCTGCCGCAGCT1100.1009609648196929No Hit
ACAGCCGGGATATAATATTTTTTACTTCTATATATTGAGAGTATTTAGTATA1090.10004313786678659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)