FastQCFastQC Report
Sat 31 Dec 2022
SRR5844071.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844071.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108171
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT5940.5491305433064314No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC5580.5158499043181629No Hit
TGTCTAGGGAGGAGATAGAGAAGAAATCGTTCAGAAAATAGAAGGAAAAACA1260.11648223645894001No Hit
TATGCTGGGATTGCATTTCTGAACAAAATCAAGAATTCGTTGCCAGGAAAGA1180.10908653890599143No Hit
TTTTCAGGGAGAAGCTGGAGAGCCAGTCACATTACATCCAAAACTGTATTGG1160.1072376145177543No Hit
TTGAGCTGGGTTAGACTTATAGTCCTCCTGGAACTTGAGTTATTAAAATCAT1150.10631315232363572No Hit
CGACTAGGGGTTTAATTTCTTAGTTCATAAGACTTGATCTCAACCCACTTTT1150.10631315232363572No Hit
AAGCGCTGGGCTTAGAAGGATGATTCACATATTTATGTTCTAGAAAGTAGGC1120.10353976574128002No Hit
TTGTTGGGGAAGCCCAGCGATGAGCACAAGACCGACCTCAACCCCGACAACC1110.10261530354716145No Hit
GGCTCTGGGATGTCAGTGATCATTTTTTGTCATTTTTCTGAAAATTAGTTGA1090.1007663791589243No Hit
TTCTTCGGGGCAGAAGGGAAACGTGAAGAAGGTGAAGATGGCGGTGGCCAGG1090.1007663791589243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)