FastQCFastQC Report
Sat 31 Dec 2022
SRR5844049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106530
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT7960.7472073594292687No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC6660.6251760067586596No Hit
GTCTGGGAGGCTGTATGAGGTGTCAGTCGGCCCCTACTGGGAGGTGTCTCCC1360.12766356894771427No Hit
TGCACCTGGGGTGATCTGACCACAAAGAAAGTAGTAGACTACACAACAGCGA1350.12672486623486343No Hit
AGCTTAGGGACTGATTTATATGTGTTATGCTTGAATTTTATATTGGTGTCCA1310.12297005538346006No Hit
AAGCAGGGGAACAAATGGTGCCAGGACAACTGAATCTCTACATGCAAAAGAA1300.12203135267060922No Hit
TCATACGGGGACATTTTTAATTTGCATGTAGCAGGTTAATTTTTAAAAACCA1260.11827654181920585No Hit
ATGTTAGGGACCATAGTAACTACATTGATTACTAAATCAGAATTCATTTAGC1260.11827654181920585No Hit
TTTAGACGGGAGGTCTCAACATTGTTTTACCAGCCCCCATTCAAGATGGAGT1250.11733783910635501No Hit
AGCTACAGGGAATGAAATTAATATTGCCAGAAAAATATATTCAGTATCAACA1250.11733783910635501No Hit
TACAAGGGGATCTAGAAAGTGCTAAACTTGTACAGATTTTACATAGACTGCT1250.11733783910635501No Hit
CCGTCTGGGATATGCCAACCAGAGGGTTTATTAAGTCTCTTGTCTCCAGCAA1250.11733783910635501No Hit
AACCGCGGGTGCGCGCGGGCTAGAACACCATTGTCATCTGACTTATCAAACC1250.11733783910635501No Hit
TTAGATGGGAGTGATAAAGCTATAAGGATAAATAAAATGAAGTAAGGGAAAT1230.11546043368065334No Hit
TTTTGCGGGCGGCCCAGCGTGGCGTCCGCGTCCTCGAGGTGGCCTCGGGCTC1220.1145217309678025No Hit
GTCTGAAGGGCTACCCAACAGCTTTGTGTATTCTTCTTTTAGCCACAGTCAT1210.11358302825495166No Hit
CGTTTCGGGCAGTATCTGAAGCTGCTTAGCTCACAGAAATACCAGATCCTAT1190.11170562282924999No Hit
GCTGAGGGAGTGAACATACAGTTTTTCATATTTTTTCAAAAGAATTTATGTT1190.11170562282924999No Hit
GCCATAGGGGACTCTCTTAAAACACCAAAACCAAGCAATATTGAACAAAATC1180.11076692011639915No Hit
TTACGTGGGATAGGCACCCACCTTTGGGACAACCCAGTGATTATGAACATGT1170.1098282174035483No Hit
CTTATGGGGGAAGTGTGCACATTTTTTGGTACTGGTGGTTGGTACTTCAATA1170.1098282174035483No Hit
TCGCTAGGGGCTCTTCCGATCTTTCGCCGGGCTTGGATATGATATTATTTGG1160.10888951469069745No Hit
AGTGTGGGGCTTTCAGAGATAGGTTAAACATATACAAGCATATTTGCAAATC1150.1079508119778466No Hit
CTGCATGGGGATTTCACCATTCTGGTCCCGTACTTGATTCTCTCATCTGTTC1140.10701210926499578No Hit
GTAGGGGGGATGGAAAGTTCAAGCTTTTCTTCTTGCCCGCTCAGGGCTGGCC1140.10701210926499578No Hit
TAGACCGGGTTCTCCTTTGACCTGGCTTTAAGAGAATTAAAACCATGTGGCT1120.1051347038392941No Hit
TTTTGAGGGGGTGTTTAGAAGTGAGTTAACTTCTAGAGACATTTGGGGTCCT1120.1051347038392941No Hit
AGACTTGGGTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGGCCTGG1120.1051347038392941No Hit
GCACACGGATCCCTGGAAGCCAAGCTACTTTTAAATGCTCTTTCTGGCTAAA1120.1051347038392941No Hit
GCTACGGGACAGAGCTTCCTTCCTCACTTTACACTGAAAATCTGTTATCAGT1110.10419600112644326No Hit
AATAGTGGGATAGGACATTGAGCAGAGCAATCAGAAGGGTTTAACTTTAGCA1110.10419600112644326No Hit
ACACTTGGGATGTGACATAAAAAACATGAAGGATATCTTATTTTCACTATTT1100.10325729841359241No Hit
CTTGAAGGGCTACCAGCCTGGGCAACATCATGAGTCCCCGCTACAAAAAATA1100.10325729841359241No Hit
GCTGCTGGGAGTAGAGAAATATGCTTAAAATCATATGTATGTTCCTTTACAC1100.10325729841359241No Hit
TTGCTGGGGACTTGGAGTATTCATACTTGTGGCTTGCCCAGCAGAACTGTCT1090.10231859570074159No Hit
CTTTATGGGATTCAGAAGTGGTTTGAGGTTTCTGTTTTTTGGTGGTTTTTGT1090.10231859570074159No Hit
TGCAATGGGAATTAATAATTGGAGCTGCAAAGCAGATCGTGACAAGAGATGG1090.10231859570074159No Hit
TCAAAAGGGACTGTCAGCCCCTGTATCCATGTGTTCTACATCCGTTGTTTCA1080.10137989298789074No Hit
TAACCAGGGAAGTTAAAAAAATGACAGTGAGACTTCTGCTTTTGATTAATAT1080.10137989298789074No Hit
TACGCAGGGATATTTAGAAAAGCTGTTCTCTCATGCAGTGGATATAATATAC1080.10137989298789074No Hit
TAAGCTGGGAACTAGAAACACTTTAAATTTTCTCAAGTAGTGCAGCTGATAG1080.10137989298789074No Hit
TTACGCGTGGGTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGC1070.1004411902750399No Hit
CTAAGTAAGGGAATTTTAGCAAAGACCAATTGTTGTGATAAACTGGTGTTTT1070.1004411902750399No Hit
TTGCACGGGATCACCATGGACTGCTCCTTAACTTGACATGTATTCTTTTGCA1070.1004411902750399No Hit
CCGCTAGGGATGCAGACAATTGAAATGCAGAAAGTTGAAAAATTATTCAAAT1070.1004411902750399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)