FastQCFastQC Report
Sat 31 Dec 2022
SRR5844048.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844048.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106746
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT7220.6763719483634048No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC6170.5780076068424109No Hit
CTAAGTAAGGGAATTTTAGCAAAGACCAATTGTTGTGATAAACTGGTGTTTT1520.14239409439229572No Hit
AGCTTAGGGACTGATTTATATGTGTTATGCTTGAATTTTATATTGGTGTCCA1490.13958368463455303No Hit
GCTACGGGACAGAGCTTCCTTCCTCACTTTACACTGAAAATCTGTTATCAGT1440.13489966837164857No Hit
CTTGAAGGGCTACCAGCCTGGGCAACATCATGAGTCCCCGCTACAAAAAATA1410.1320892586139059No Hit
TGCCATGGGAGGTAAAGATTATTCTGTCTTGGGCTAGGTTTACAGTTTGCAA1400.13115245536132503No Hit
TACAAGGGGATCTAGAAAGTGCTAAACTTGTACAGATTTTACATAGACTGCT1380.12927884885616323No Hit
CCTATAGGGACCATCAAGCATGTGAGTGAGATTGATTATAACTTGTGAGAGT1360.12740524235100145No Hit
TTTAGACGGGAGGTCTCAACATTGTTTTACCAGCCCCCATTCAAGATGGAGT1330.12459483259325875No Hit
TCATACGGGGACATTTTTAATTTGCATGTAGCAGGTTAATTTTTAAAAACCA1310.12272122608809696No Hit
CATTGGGGGCTAGGGACGGGTAATATTTAAATCTCTTCGGGTAACAAACAAG1280.11991081633035429No Hit
AGCTACAGGGAATGAAATTAATATTGCCAGAAAAATATATTCAGTATCAACA1280.11991081633035429No Hit
GGCAGTGGGATATGAGGCACAGCTAAGTTTCATATTTACCCACCTACCTGTC1270.1189740130777734No Hit
TTTTGCGGGCGGCCCAGCGTGGCGTCCGCGTCCTCGAGGTGGCCTCGGGCTC1270.1189740130777734No Hit
TTTGTGGGGCACCTCAGCCTCTCTAGCAGCTGGGACTAAAGGCACGCACCAC1270.1189740130777734No Hit
TCGCTAGGGGCTCTTCCGATCTTTCGCCGGGCTTGGATATGATATTATTTGG1240.11616360332003073No Hit
AATGTGGGAGAGAGAGAAAAGAAAGAAAAAGTCCTTAGCCTTCTATTTTGGC1220.11428999681486894No Hit
CTTATGGGGGAAGTGTGCACATTTTTTGGTACTGGTGGTTGGTACTTCAATA1210.11335319356228805No Hit
AACCGCGGGTGCGCGCGGGCTAGAACACCATTGTCATCTGACTTATCAAACC1210.11335319356228805No Hit
TAACCAGGGAAGTTAAAAAAATGACAGTGAGACTTCTGCTTTTGATTAATAT1200.11241639030970715No Hit
TGCACCTGGGGTGATCTGACCACAAAGAAAGTAGTAGACTACACAACAGCGA1200.11241639030970715No Hit
TCTAATGGGAACATAGTATTTGAAAGCCTCATGATAACCTCAAATCAAAAAT1200.11241639030970715No Hit
TCACTAGGGAATGTGGGAATTTAGATTGCTGACTTTAGACTTTTTGGTTAAT1180.11054278380454538No Hit
CTTGCAGGGGTAAAAAAATAAACATGCTTCCATCTCTTGTAACTATAACTTC1170.10960598055196448No Hit
ACAAGTGGGCTGTAGGAGCCACTCCATTACTGGGATTATAATGTCCCTTAAT1160.10866917729938359No Hit
GTTCAGGGGATAAAATTGTTTAATCACTTCCTGCATGTTCAATTGACTCTAC1150.10773237404680269No Hit
CTTTATGGGATTCAGAAGTGGTTTGAGGTTTCTGTTTTTTGGTGGTTTTTGT1150.10773237404680269No Hit
CTAACAGGGATCCTGGAGTCTCTAGCCAATGCATACAACAGCAAAACCACTA1150.10773237404680269No Hit
TGCAATGGGAATTAATAATTGGAGCTGCAAAGCAGATCGTGACAAGAGATGG1140.1067955707942218No Hit
ATGTTAGGGACCATAGTAACTACATTGATTACTAAATCAGAATTCATTTAGC1140.1067955707942218No Hit
CACCTTGGGAGAGTTGAGAAGTTTGGTTTACAGAAATCAACTCATTTCTCTA1130.10585876754164089No Hit
AAATGAGGGCAGTGATTTGCTAATAATAAAAAAGGACAGAAAAAATGAAAGT1130.10585876754164089No Hit
CGAAAGGGAGCTAAGCTACCTTGTCATATGTGTTGATTCTTGAAAACTGGGA1120.10492196428906No Hit
GTAGGGGGGATGGAAAGTTCAAGCTTTTCTTCTTGCCCGCTCAGGGCTGGCC1120.10492196428906No Hit
TTGCACGGGATCACCATGGACTGCTCCTTAACTTGACATGTATTCTTTTGCA1120.10492196428906No Hit
CCGCTAGGGATGCAGACAATTGAAATGCAGAAAGTTGAAAAATTATTCAAAT1120.10492196428906No Hit
CTGCATGGGGATTTCACCATTCTGGTCCCGTACTTGATTCTCTCATCTGTTC1110.1039851610364791No Hit
TTCCGTGGGTTGCTACCAGTGGGTGCTGATTCAGCATCACAAGTGACTGAAA1110.1039851610364791No Hit
ACGTCAGGGACGTGTATATATGGTACATATTTGAATTAAATGAAATATATCA1110.1039851610364791No Hit
CTTGCGGGGATTTCTACCGCATCTGCAGTTACTTCCTCCACTCAAGTCTTGA1110.1039851610364791No Hit
AGCACCGGGCACATCTCTGTGAAAATTTTCCATATCAGTTAAGTAGTTTTCG1110.1039851610364791No Hit
GCTTTTGGGACGTTTGGTTTTCACATACAGCAGCTCTATTGAATAACATGCA1110.1039851610364791No Hit
ATTTCTGGGGGTGACAGAGGAGTTTAAGCAAACCTTGCTCTGCATCACTAGT1100.10304835778389822No Hit
TACAAGGGGAAGAGAAAATCTAGAAGGAAACTTCCTTTTTCTACTTTCCTAA1100.10304835778389822No Hit
GAATAAGGGAAATGAAAGGTTTGTGGATTTGCATTAAAGACATCACTACCAT1090.10211155453131733No Hit
GCCATAGGGGACTCTCTTAAAACACCAAAACCAAGCAATATTGAACAAAATC1090.10211155453131733No Hit
AGTTTAGGGGTTTCTTTGACTTCCTTAACTTCCAAACTCAACTCCCTTTCTA1080.10117475127873643No Hit
TGGATTGGGGTAGCTCAGTATCCCTCAATATATATACAGAAATAATTAACAA1080.10117475127873643No Hit
GACAATGGGCAGCTGACCAGAAGAAGTAGTCCTTCGCTGAATTGAGATTTAA1080.10117475127873643No Hit
CACCCCAGTGCCTGGCCCTTCATGGAGCCTGTGAAGAAGTCGGAGGCCCCTG1070.10023794802615554No Hit
TCTAACGGGCGGGTGTTTTGGGAGGTGAAAACTGGAGTGCAGGGTTTCTTTG1070.10023794802615554No Hit
TTTTGAGGGGGTGTTTAGAAGTGAGTTAACTTCTAGAGACATTTGGGGTCCT1070.10023794802615554No Hit
GTCTGGGAGGCTGTATGAGGTGTCAGTCGGCCCCTACTGGGAGGTGTCTCCC1070.10023794802615554No Hit
CTAAAGACGGAGCTTTCTGCCATTTCAAATTGACCACATCAGGCAGATGGCG1070.10023794802615554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)