FastQCFastQC Report
Sat 31 Dec 2022
SRR5844047.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5844047.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107243
Sequences flagged as poor quality0
Sequence length52
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGCCGTCT7510.7002788060759211No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACACCTCGTTATCTCGTATGC6220.5799912348591517No Hit
TCTGGTAGGGATTCTTAGATGTCATATTCAAGTAAATATTTCTTCAGACTTA1400.13054465093292802No Hit
TCATACGGGGACATTTTTAATTTGCATGTAGCAGGTTAATTTTTAAAAACCA1390.12961218914054998No Hit
ATGTTAGGGACCATAGTAACTACATTGATTACTAAATCAGAATTCATTTAGC1360.12681480376341578No Hit
GCTACGGGACAGAGCTTCCTTCCTCACTTTACACTGAAAATCTGTTATCAGT1340.12494988017865968No Hit
AAATGAGGGCAGTGATTTGCTAATAATAAAAAAGGACAGAAAAAATGAAAGT1330.12401741838628162No Hit
AGCTTAGGGACTGATTTATATGTGTTATGCTTGAATTTTATATTGGTGTCCA1220.11376033867012299No Hit
CATTGGGGGCTAGGGACGGGTAATATTTAAATCTCTTCGGGTAACAAACAAG1200.11189541508536689No Hit
TCTAACGGGCGGGTGTTTTGGGAGGTGAAAACTGGAGTGCAGGGTTTCTTTG1190.11096295329298882No Hit
AATGTGGGAGAGAGAGAAAAGAAAGAAAAAGTCCTTAGCCTTCTATTTTGGC1190.11096295329298882No Hit
GCCATAGGGGACTCTCTTAAAACACCAAAACCAAGCAATATTGAACAAAATC1180.11003049150061077No Hit
TAACCAGGGAAGTTAAAAAAATGACAGTGAGACTTCTGCTTTTGATTAATAT1170.10909802970823271No Hit
TGCCATGGGAGGTAAAGATTATTCTGTCTTGGGCTAGGTTTACAGTTTGCAA1170.10909802970823271No Hit
TACAAGGGGATCTAGAAAGTGCTAAACTTGTACAGATTTTACATAGACTGCT1160.10816556791585465No Hit
TTTAGACGGGAGGTCTCAACATTGTTTTACCAGCCCCCATTCAAGATGGAGT1150.10723310612347658No Hit
TGCACCTGGGGTGATCTGACCACAAAGAAAGTAGTAGACTACACAACAGCGA1150.10723310612347658No Hit
GACTGAGGGAGTGTACTCTTCTGTCATCTCTATTTGACAAACATACTTATTA1140.10630064433109854No Hit
CTTGCGGGGATTTCTACCGCATCTGCAGTTACTTCCTCCACTCAAGTCTTGA1140.10630064433109854No Hit
TCAAAAGGGACTGTCAGCCCCTGTATCCATGTGTTCTACATCCGTTGTTTCA1140.10630064433109854No Hit
ACTGCTGGGTGCTGAGTGAGGCCAGTTCCTCATCAGGCTCAGGGCAGGTGCC1140.10630064433109854No Hit
TGGCGGGATTCCATCCAAATGTTAACCGAGAGAGCAAAAGTAGCCATATTCA1120.10443572074634241No Hit
GTTGTTGGGATAGCCTTTTTCTTCCCTCCCCCAAAGAATTCTGTTTGCCTAA1120.10443572074634241No Hit
AACCGCGGGTGCGCGCGGGCTAGAACACCATTGTCATCTGACTTATCAAACC1120.10443572074634241No Hit
ACACTTGGGATGTGACATAAAAAACATGAAGGATATCTTATTTTCACTATTT1110.10350325895396437No Hit
TTTTGCGGGCGGCCCAGCGTGGCGTCCGCGTCCTCGAGGTGGCCTCGGGCTC1110.10350325895396437No Hit
AGACTTGGGTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGGCCTGG1100.10257079716158632No Hit
GGCAGTGGGATATGAGGCACAGCTAAGTTTCATATTTACCCACCTACCTGTC1100.10257079716158632No Hit
AAATGCCGGGGACATACCAATTGTTTATTATGTGCAAGTTACACTTCATCAA1100.10257079716158632No Hit
GAACATGGGATGTTTAGTATATTTTGTTTTAGCAAATAGGGAAGCAAATACT1100.10257079716158632No Hit
CTTGCAGGGGTAAAAAAATAAACATGCTTCCATCTCTTGTAACTATAACTTC1090.10163833536920824No Hit
GCTGAGGGAGTGAACATACAGTTTTTCATATTTTTTCAAAAGAATTTATGTT1090.10163833536920824No Hit
CCCTGGGGGATCTCAACTCGGGAATCCAAGTGAGAGAAAATGGTGAATTGGG1080.10070587357683018No Hit
AGCACCGGGCACATCTCTGTGAAAATTTTCCATATCAGTTAAGTAGTTTTCG1080.10070587357683018No Hit
TACGCAGGGATATTTAGAAAAGCTGTTCTCTCATGCAGTGGATATAATATAC1080.10070587357683018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)