FastQCFastQC Report
Sat 31 Dec 2022
SRR5843947.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843947.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132801
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT4170.3140036596109969No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC4160.31325065323303286No Hit
GCATGGGGAGACAAGAAAGAAAGACATGGTTTGGGCAATGTATAAATGTCAT2400.18072153071136512No Hit
GGCCGCGGGGAGTACTTTTTACTGTTGCAGAGAATTAAGTCACTAAACGTTA2260.17017944141986882No Hit
TGCAAAGGGGATGAACTTCTTTTGAAAATATGTACATTATTTTTATTCACTT2080.15662532661651643No Hit
AAGCTGGGGAGTGAGAACATGTGATATCTGTCTTTCCGTGTCTGGCTTAGTT2060.1551193138605884No Hit
AGCACAGGGACCTTTTCTCTTTTCTTTCTGTCTTGTTAATGCTTTTAAAAAC1970.14834225645891222No Hit
CTAATAGGGGGAAAAGAGTCAGTCTGCAAAAACCGGAAAAGGAGGTTGTTTT1900.14307121181316407No Hit
TGACTTGGGGGGAATGCTTTGTGCGGGAAATCCAGAAGTTGCAACAGGAAGA1860.14005918630130798No Hit
TGCGCAGGGATTTAAGCCCAGTTTTCAGGTACTACATCTGTAACTAGTGAAT1850.13930617992334396No Hit
TATTCTGGGTAATATTTTCCCTGTAAAATCTCCTTGGAAAGGCTTTCAGATT1810.13629415441148787No Hit
TACCACGGGGACCTTTGCCTGGGCCATTTTCATGGGATTTAGTATTTGCGGA1800.13554114803352385No Hit
CAGCCTGGGCAACAGAGCGAGACTCCATCTAAAAAAATAAAAAATAAAAAAT1790.13478814165555983No Hit
AGAGAGGGGAAATGGGAGTGGATGGATGGATGGCAGCCATAAGATCCCAGAT1750.13177611614370374No Hit
CTTGTGGGATTGGAAACAGGACAAAGAATACTATTCAGAATTTTTCCTTGAA1750.13177611614370374No Hit
TTGCACGGGAGATGGTCATGATGTGGCACAACAATGTAAATGTATTTCACAC1740.13102310976573972No Hit
TTTACTGGGGGCACTAATGAACATTTTGAAAAAAGATGGGAACGATAAGCTT1720.12951709700981168No Hit
ACTAAAGGGCAAGACTTTGATCCTTGGAAACCGTGTGTCCAGCATTGAAGAG1710.12876409063184766No Hit
CTTCGAGGGGTGGCACCAAGAGTGACCTGCTGGAAGAAGACCGGAGGCGTCG1680.1265050714979556No Hit
CAGATAGGGTGATGGGGAAGATGAATTTGTTCCTTCAGATGGGTTAGATAAA1680.1265050714979556No Hit
CACCTAGGGCTCCTGCCTCTGGATTTTAGGTGTTGATTTCTGGATCACGGGA1680.1265050714979556No Hit
CAGCCATGATCCCAGCAAGCATCACTGTATTGTTTACCTGCTGTGGACTTGA1670.12575206511999157No Hit
GCTGCCGGGTGGTTCCTTCTCTTCCTGCGGATGTAGAGGTGGGGCCCCTTCC1670.12575206511999157No Hit
CAAGTTGGGGTGAACACATTGGAACCATAAAATATCAATGCTGGGAGTGTCA1660.12499905874202755No Hit
TAAACAGGGTACCTCCAGGAACTCCACCAGGTTCCCACAGTAAATATGAGAG1660.12499905874202755No Hit
ACAAATGGGGATTTATGACGAGCTGCATAACTAAAAAGAAGAAATCCACACC1660.12499905874202755No Hit
CTAAAGGGGATGTTTGAATATGTGCAGTTTTCAACATTTTGGCACATGAAAG1650.12424605236406354No Hit
TTTCTTGGGAAGCTTCTTCATGGAGTAAAAAATGTATTTAAAAGAAAATTGA1630.12274003960813548No Hit
TAGCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1620.12198703323017146No Hit
ATTTGGGGGGACACACCCGGAAGCAGGGGCCCGAGCGGAGCCGGCCGCGATG1620.12198703323017146No Hit
GACAGAAGGAAGGTATTGAATAAGGTATTCTTGTCAGTTTAGAAATGGACTG1610.12123402685220745No Hit
GCACCAGGGTCTCACAAATTCCCACTAAAGAACTTACTCATGTAACCGAATA1610.12123402685220745No Hit
CAGTTAGGGTCAGATTCCACTTTTGACTTTTCAGATCAGTTTGACACAAGTC1610.12123402685220745No Hit
GACTGAGGGGGGATAATGGGTCGCAGTGCACTCCCAAGACCTTCGTTGGCAA1590.1197280140962794No Hit
GTAGGCGGGGGAGAAGATTATCGAAGACAAAACTTTCGGTTTGAAGAATAAG1580.11897500771831537No Hit
TAGGTAGGGCAAAGTCTTGGTGTTAAAGTTGTTTCGTTGTTTAATTTCCTTT1570.11822200134035134No Hit
AAAACAGGGGTTGGAGATTCCTTTCCCAGTTTTATAGCACAGTGCCCAGAAT1570.11822200134035134No Hit
GCTGATGGGGGATAACAGGCAGCAGAGGACTATAATGCATGAAAGGACAAAA1570.11822200134035134No Hit
ATCCATGGGTTCTAAAAGCATCACGTCAAGGTTTAAATGAAATGAGATGAAT1560.11746899496238733No Hit
TCCACAGGGATGCTTATGGATAGGAAGAATCAATATCATGAAAATGGCCATA1560.11746899496238733No Hit
GATGCATTGATTAGATTTGTTCTTTATGTTGCCAGGCCCAGAAGAACCCAGC1560.11746899496238733No Hit
CCGGTAGGGGGATGTTCAGAGCCAGAGCGCCATGCATGCTGGCAAGGAAATG1560.11746899496238733No Hit
TCACGGGCGGTATAAAGAATTAAAATTCCCAGGGACAAAAAGGAAGTACAGA1560.11746899496238733No Hit
GAAGTCGGGGGACTGAGCCGGGTGGATGGTACTGCTGCATCCGGGTGTCTGG1560.11746899496238733No Hit
TGTTTTGGGTAATGTGACTATTCTTGGGCGATTTGATTACAGCCAGTGTGAC1550.11671598858442331No Hit
GAAAAAGGGCACTATGAAGTCTAAATCTAAGAGAAGGCTCAGTAATATCGTA1550.11671598858442331No Hit
TTGTAAGGGAGGAGTGTGAAACAAATTATTTTTATCTTCATCCAAAGATAGA1550.11671598858442331No Hit
TCTGTTGGGGGTGTATGAAAATATCAGATCTTGGGATCTGCAATAAAAGTGA1540.1159629822064593No Hit
ATTGTAGGGCAAACAGTAGATTTCTTCCGGTGTATGGCTTTGTCATTGTTAT1540.1159629822064593No Hit
TGTTCCGGGATTGAAAGATACATGTTCTTAGTTTATGATCCCAAATAATAGT1530.11520997582849526No Hit
TTACAAGGGGTGCAGGATATGCAGGTTTGTTACCTAGGTAAATGTGTGCCAT1530.11520997582849526No Hit
ATAAATGGGGGGAGATTGGTGTGATGTTTCTTTGTAAGTGAGGAAGGATTTT1530.11520997582849526No Hit
ACCAATGGGGGGACACATTAAAAGTTGAATGGTTGGATGAATGGATGGATGG1520.11445696945053124No Hit
TGCAACGGGTGGCAATTGGCTGGATTAAGCTAAACACTGGTATCACTGATTA1520.11445696945053124No Hit
GACAAAGGGACTGTTCACAATGGCCAGGATGTGGAGTCGGCGAGGGTGTCCA1520.11445696945053124No Hit
AGTAATGGGGATGCAGCAGCTTTGTCATTTCTTCAAAATGTTTAATGTTCCA1510.11370396307256722No Hit
GTAAATGGGGAAATTGTTTCTATTTTTTAAAAAATAATATTTCTATTCTCAC1510.11370396307256722No Hit
GCATTTGGGGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCCG1510.11370396307256722No Hit
GCAGTATGCTTGTGGCAATGCCCTTGTCTGTGACAACGTGGAAGATGCCCGC1510.11370396307256722No Hit
TTCCTCGGGATTCCAGAGCTATTATTTACTCCTTACCAAGGGAAGTTACTTC1500.11295095669460321No Hit
CTGAGCGGGAGGCTGGTCTGTCTGTGGTAATTCTCAAAACAAAATTTCACTT1500.11295095669460321No Hit
TAACAAGGGGTTGTATACAAATGATTTAATTGTGAAAACTTCATTATTGGGG1500.11295095669460321No Hit
CATAAGGGGGGAGGACAGCAGCGCCGTGCCCCCCGTGCTCCTCTACTCGCTG1500.11295095669460321No Hit
GCAAGGGGCTCACAGCTGCTATTAACCCTATAATGACTGAAATGACCCCTCC1490.11219795031663918No Hit
TACTAAGGGGACTTAGATCCCCCACTACTGTTTTTCTGTGAGAAGCAGCTAT1490.11219795031663918No Hit
GCCCTCGGGACACTACGTTTTGCTCCAAATCACCAAGATACTGTTTTGGAGC1490.11219795031663918No Hit
GCAATGGGATCACTCAGCATTGGATCTAAATATAAAAGTGGTGCTTTCAGTG1480.11144494393867516No Hit
GCATTAGGGGTCACTAGCTGGGTTGCCCTGCATTTCTGTTGAAAATCAGTGT1480.11144494393867516No Hit
ATCGGGTCAGATAGTGAGGTTAGCTGAGAAAAGGAAGCATGGTAGAAGAAAT1470.11069193756071115No Hit
AGCTATGGGATAATTGGCATAGACATAAAGGATAAAAGGAAAATAACCGTCT1470.11069193756071115No Hit
CGACAGGGGTCTAGTTGTGATGTTACATTGTTAATTTGAGATCTTTCTAACT1470.11069193756071115No Hit
AGGTTAGGGAAGCAGCAGGAAGAAGTATTTCGAAATTTAGATGCTCAGTATG1470.11069193756071115No Hit
TCGCATGGGGTTTATTCACCTTCAGCATCTTTTCATTGAAAATGCGGTAGAT1470.11069193756071115No Hit
TGTTGTGGGGAGTCACTGCGCCCGGCCTACATGCCGGTCTTTCAAGTGTTCG1460.10993893118274713No Hit
CACATAGGGATGTACCATAGGTATCAGGTTAAAACACTAAAGTCTGCCAGAA1460.10993893118274713No Hit
AGTTCTGGGGATTTTTGCAAATACAAAGTATTGTAAATGAATATATGTAATT1460.10993893118274713No Hit
CGCTTGGGGTGATATGAAGGGATTAACTGTAGCAGGATAGTCAACCTGACCG1450.10918592480478309No Hit
AAACATGGGAAATGATGTGGTTTCTTATATGAATTCTTTACAAGCTGTTGTA1450.10918592480478309No Hit
ATGGTAGGGAGTAAAAATCTGGACAAGGACATGTATGGTGATGACCTAGAAG1450.10918592480478309No Hit
CAGCACCATTTATTAAATAGGGAATCCTTTCCCCATTTCTTCTTTTTGTCAG1450.10918592480478309No Hit
TGGCGCGGGATTTCCAGGCAGGCTCTCTTACTTGAACACAAATCCAAAAACT1450.10918592480478309No Hit
CAACATGGGCTGATTTTAAGAAATCTGGTAAAATGTTCGCTTTCATTGTGCA1440.10843291842681907No Hit
TATCTGGGGGGAGGACCTGGCGGATGAAATGATATGCATCACCACCTTGTAG1430.10767991204885506No Hit
GCGCCGGGATAAATTCCGATGATAAAAAATAGTGTTCCACTCCCTCCCTTGG1430.10767991204885506No Hit
TTGCACGGGGTCCAGACAGGAAGTTCCTCTTGCTACTCTGGAGCCATTAGTC1430.10767991204885506No Hit
TTATTGGGGACAAGCAGGCATGCGCAATTCTAATGAAGTCTATCATTTGAGT1430.10767991204885506No Hit
ATACGTGGGCTGATTGCTGGCAGGAAATGTTGGGAATTTGGTTTTATGGTCT1430.10767991204885506No Hit
GCTAACGGGAGAACCAGAAATACCATTTGACCCATGACTTTTGCCATATAAA1430.10767991204885506No Hit
GCGCTAGGGTCTACACACGGGTCTCGCAGTGGGGTTGCCAAGGAAGGCTTTT1420.10692690567089104No Hit
ATAGGCGGGGTAAAGATAATGCCAAGCCCAAATGGCTTCACTGGTGAATTCT1400.105420892914963No Hit
GCTTAGGGACCTGATTAAACCTGTCATGAATTATAAAAGGACTTTTTCTTAT1400.105420892914963No Hit
TGACTCTGGGCTACCTTCACAGAAACATCCAGATGTTTTAAATAAAATATCT1400.105420892914963No Hit
TCTAAGGGGGGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCAC1400.105420892914963No Hit
ACAACTGGGGCTCTTTCTCAGTGACCGGGTGGTTTGCTTAGGCGCAGACGGG1390.10466788653699897No Hit
TATAGCGGGATATTTTTTAATGTTTACGTCATTTACACTGCTGCTTTTCTCA1390.10466788653699897No Hit
CAGCGGGGGTTTCTGACTGACATTATTTTTGTCTCATAGGGTGGCACCTGTG1390.10466788653699897No Hit
CAGTATGGGAACACTGAAGATAGCACGAATCTCTGATGTTTGCAAGTTCAGA1390.10466788653699897No Hit
TTAGTCGGGTCTATATACAATGAAATATTATTTAGCAACAAAAAGGAAGGAA1390.10466788653699897No Hit
TTATTCGGGGGTATCTCTTTATTGGGTTGTTTAGTGTAAGGAAAAAGTTGAA1390.10466788653699897No Hit
TCGAAGCGGGAAGGGACAGCAAGTGAGCAGAGATGTACTGCAAAGTCGCCAG1390.10466788653699897No Hit
ACGTGAGGGACAGCAGATTTTGCTGGTTACTACAAGCTTGAAAGATGGGTCT1390.10466788653699897No Hit
TATAACGGGCGATCTACACGTGGGCAGGGCAGGGCTTTAGGATGTTCTGGAT1390.10466788653699897No Hit
GACTAAGGGCATATTAAACATTTCTGTTTGTACTTTTATTTATTAGGTGCTA1380.10391488015903494No Hit
GTCGCGGGTAGAAATGAAAACGAAACTGAAGTTCCACAATCTGGGAATAACA1380.10391488015903494No Hit
ACCTAGGGGTGAGCTCCCAGATTCGTCAGAATTATTCCACCGACGTGGAGGC1380.10391488015903494No Hit
TTGCGCCGGGCGACGCTCTTCCGATCTTAATAGGGGAAGAAACAAAATGTCT1380.10391488015903494No Hit
AACATGGGGTCAGCTCCTTCGGTAGTCACTTCGTACATAGTGATTCATGATG1380.10391488015903494No Hit
AATGGCGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC1370.10316187378107092No Hit
ATTATCGGGCGATCTTTGTGGGGGAGTCACTAAACCAAAGAGAGGAAATAAT1370.10316187378107092No Hit
GCACAAGGGTAAGGCGGTGGGTTGACCACCTTTGTTCTCCACAAGTCAATCA1370.10316187378107092No Hit
AACGTTGGGAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAA1360.10240886740310691No Hit
TAGTCAGGGATGATTTGATGTTTAAAAAAGAGGGTGGTTTGAACATAGCCCT1360.10240886740310691No Hit
CACAAAGGGAGTCTACTGTACTGGGTTTAAATCTGAAGATTCCAATTATGAG1360.10240886740310691No Hit
GTATATGGGATGCAGACAATTGAAATGCAGAAAGTTGAAAAATTATTCAAAT1360.10240886740310691No Hit
GCAATGGGGGTGACAAAAAAGCTGCCTATGAAAGTCTAATATTAGATGGGCT1360.10240886740310691No Hit
TCAGGGAGGAACAGAGCAAACAAGCAGTAGAGATGAAGAATGATAAGTCAGA1360.10240886740310691No Hit
GTTGCAGGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCTGCCTG1350.10165586102514289No Hit
GCGAGGGGGAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCC1350.10165586102514289No Hit
TGGGCAGGGAATAACAGTCAATGGCATAATAATGCTCTCCTTTTTGAGAAAT1350.10165586102514289No Hit
CAACGTGGGCTCCTATAAGTACAGAATACATTTTTCTCTTGGCATATTTTGA1350.10165586102514289No Hit
TTGACCGGGGTTTTAGATGATAACCACAGGTCTACAAGAGCGTTTTTAGTAA1350.10165586102514289No Hit
TATCGGGGGAGTCACAGAGATAATACAAATGTGAGGAAATAATGCTGGTGCC1340.10090285464717885No Hit
TTGGATGGGGATATTGGCATTGGCACATAAAAACTTTGAAATGTCTATATCT1340.10090285464717885No Hit
AACAATGGGACATGGATGAAAAGGAGGAGAAGGAATTTAATACTAAGGAAAC1340.10090285464717885No Hit
AACTAAGGGGAGTGTTAATCATTTTTAAATACTGGCCAATAGAACAGCCAAA1340.10090285464717885No Hit
TGATGCCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1340.10090285464717885No Hit
AGGTATGGGTGTGCGTGTGTGTGTGTGTAATTTTTTTGGTTTCCTAGTAATC1330.10014984826921483No Hit
GGAGCTCAGATGGACTCGGGAGGGAGAAACAGGAAGAGCCCTCTATGGCCCA1330.10014984826921483No Hit
TTCAAGGGGGTTACAAAGGGATGGGGGTTGTAAACCCTCTGAGACTCTGCAC1330.10014984826921483No Hit
AAGTTGGGGAGGCAGTCATGGTCTAATTTCATAGAAGAGTAGAAAGTGATGA1330.10014984826921483No Hit
CGCAACGGGTAGACAGGTAGTCATAGGAACAAAGGTAAATGGAGACTTTTTC1330.10014984826921483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)