FastQCFastQC Report
Sat 31 Dec 2022
SRR5843938.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843938.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168185
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT8630.5131254273567798No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC8440.5018283437880905No Hit
TATACAGGGAAGTAAAATAATAATAATAAAAATGGTTTATGAACCAAAAGAC2120.1260516692927431No Hit
ATCAATGGGCTGACCACAATAGAATGAAATTAGAGTCAATAATAGAAAGGTA2100.12486250260130213No Hit
CTTTCGGGGTAAAATATTCATTTGGAATGAGTTTAAAAGGCTGATTTAGAAA2060.12248416921842019No Hit
TGTATAGGGGTGCCATTCATGGCTGATCTGGAATTCCATTTCTGCCTTTGCT2000.11891666914409728No Hit
AATTTGGGGGTATGCAGGACAGATTTTAGAAACTTAGATTAAAATACAAATC2000.11891666914409728No Hit
CTATATGGGACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2000.11891666914409728No Hit
TCATCGGGGGAGGTGTTGGCATTCTTCGCTGATTTGGCTGTTCCCAATGTTT1960.11653833576121533No Hit
AGTGCTGGGATTTGTTTACAACTTGGAAAGAGAATTCATGTTGGCTATGATG1950.11594375241549483No Hit
GTGACCGGGATATAAGAATTTTTATATATAAAACTCACAAAAAAATTTAAAG1900.11297083568689241No Hit
TTTAGTGGGATTCCATGAGAACTTCTGATAGAGAAAGAGTTGTGCCACTTAG1900.11297083568689241No Hit
GTGTTGGGGACAGAAAGAATGAATGGACACATGAACGACTGAATTAGAAATG1870.11118708564973095No Hit
CATACTGGGATGTTACATGAATTCTACTTCAATCAAGCTGGTGATTTAAAAA1870.11118708564973095No Hit
AAGCATGGGAGTAAAGCAACTGGAAAACAAACAAACACAAAGTTCACAAGAG1870.11118708564973095No Hit
ATTGCTGGGACACTTTTTCTGTACTTACTAGGTTAAGGCAGATTTATTTTTA1840.1094033356125695No Hit
GTGCATGGGCAGTGGTCTGGATACGAAGTTTACAGTTTCATACCAACTATCT1840.1094033356125695No Hit
GTGACTGGGGATTGTAAATATGGAGCTGTTCTGATGTCTGCTTTTGACTTTT1830.10880875226684901No Hit
TGAATCGGGGGTTCCATGGGATGAAAAGAAAATGCATTGACTTTGTAGTCTT1820.10821416892112853No Hit
AACCCAGGGGAAAAACTAATGTTAAAATATCCATTTCACCTAAAGCAATGTA1810.10761958557540803No Hit
CATTATGGGAAGAACATACATTTTGAAATTATGAACATTTTTTTCATAAAAA1790.10643041888396705No Hit
ATCCAGGGGTAAGTAAGGAGAGTCTGCTGGAGATGGAGTTTAGTGAGAAAAA1750.1040520855010851No Hit
GCTTCTCCAGGAATGTCTGAATTAAGCAAGAATTGTGCCACTGAAATAGCTT1740.10345750215536463No Hit
CTCGTTGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGG1740.10345750215536463No Hit
GATTTAGGGCAATTAATGTTATGTTGAGAATATCAAGGCACATTTGTGGAAT1740.10345750215536463No Hit
ACTACGAGGGGAAGTTAGCACTATGTTTACATGCAAAAGATTAAGGAAAAAA1740.10345750215536463No Hit
ACATTAGGGAAGAAGAAACGTTTCCTAACAAAATAAAACAGTTTATTGAAAA1730.10286291880964415No Hit
TAGCAGGGGGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1730.10286291880964415No Hit
TGCAATGGGTAACAAGAAATGTGTAGATAGTAGCTCCAGTACTTGAAGCATC1720.10226833546392365No Hit
TGTCAAGGGATGTGGAAAAGCCTTTAACCAGTTCTCAAATCTTACTAAACAT1710.10167375211820318No Hit
GGAAGTGGGATCCCAAATTCTTTTCAAATGTTGTTTTAATGGCTCTGTAACT1710.10167375211820318No Hit
ACAGAGGGAGATGGGTTGAATGAATTACCAAAAAAAGCCTAGCTATATGCTA1700.10107916877248267No Hit
AATCACGGGCAACCTGAAGTAGAAGTGTTTCACAGAGAATGCTAATTTCTGG1700.10107916877248267No Hit
TTATGTGGGACATTTCAAAAAGTAAGTAAATAAGTACATAAGAAATTTTAAA1700.10107916877248267No Hit
TTCGCTGGGGTAGCTGGGATTACAGGTGCGTGCCACCAAGCCTGGCTAATTT1700.10107916877248267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)