FastQCFastQC Report
Sat 31 Dec 2022
SRR5843937.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843937.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169225
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT9400.5554734820505245No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC8460.49992613384547196No Hit
TCTAAAGGGGCTCCTGAATGACCAGTGGGTCAATGATGAAATTAAGAAGGAA2310.13650465356773528No Hit
CTTTCGGGGTAAAATATTCATTTGGAATGAGTTTAAAAGGCTGATTTAGAAA2290.13532279509528733No Hit
TATACAGGGAAGTAAAATAATAATAATAAAAATGGTTTATGAACCAAAAGAC2160.12764071502437582No Hit
TGTATAGGGGTGCCATTCATGGCTGATCTGGAATTCCATTTCTGCCTTTGCT2130.12586792731570395No Hit
ATCAATGGGCTGACCACAATAGAATGAAATTAGAGTCAATAATAGAAAGGTA2090.1235042103708081No Hit
GTGTTGGGGACAGAAAGAATGAATGGACACATGAACGACTGAATTAGAAATG2050.12114049342591224No Hit
GTCTCTGGGAAGAATAAGTATTGAAATGAAAGAATGACAGAAAGAATGAATG1990.11759491800856847No Hit
AATCACGGGCAACCTGAAGTAGAAGTGTTTCACAGAGAATGCTAATTTCTGG1990.11759491800856847No Hit
AATTTGGGGGTATGCAGGACAGATTTTAGAAACTTAGATTAAAATACAAATC1990.11759491800856847No Hit
AGCTGTGGGGATGGAGGTTTTAAAAACACAAACAAAGAAAAGAGGCAGTTGA1970.11641305953612054No Hit
GCAACAGATGGATTCCCCGTTTGACTCAAGCCGCTACTGTGCCCTGCTGCTT1900.11227655488255282No Hit
TGTCAAGGGATGTGGAAAAGCCTTTAACCAGTTCTCAAATCTTACTAAACAT1890.11168562564632886No Hit
GTGACCGGGATATAAGAATTTTTATATATAAAACTCACAAAAAAATTTAAAG1890.11168562564632886No Hit
AAATCTGGGAGGCATGTCTATGGCTGCCTGTCCTGAGGCTCCGGAGCCCTCA1890.11168562564632886No Hit
CATACTGGGATGTTACATGAATTCTACTTCAATCAAGCTGGTGATTTAAAAA1860.10991283793765697No Hit
AACCCAGGGGAAAAACTAATGTTAAAATATCCATTTCACCTAAAGCAATGTA1840.10873097946520904No Hit
TCATCGGGGGAGGTGTTGGCATTCTTCGCTGATTTGGCTGTTCCCAATGTTT1810.10695819175653716No Hit
GTGACTGGGGATTGTAAATATGGAGCTGTTCTGATGTCTGCTTTTGACTTTT1810.10695819175653716No Hit
TGTCACGGGCCTCACAATCAATCTCAGCAACTCAGCAGAGTCGCTTCAGTTC1790.10577633328408924No Hit
TGTTCCGGGAACTAGAAGCGGCTGAGGAGCGAAGGAAGTACCAGGAAGCGGA1780.10518540404786526No Hit
TCGACAGGGGTTGAAATGTATATACATTGTGGAATGACTAATGAAGCTAATT1780.10518540404786526No Hit
CGGATTGGGGCTTGGGGGCCATTTTAAACATGAAATCACCAATTAAAAAAAG1770.1045944748116413No Hit
TTGTGCCGGGTATGCACACGAACTGCCAAAATATGGTGTGAAGGTTGGCCTG1760.10400354557541734No Hit
ATGAACGGGGAGAGAAGAGAGGCGCCTGCGCTTGCGAGCTGGGCTTGTGAGT1760.10400354557541734No Hit
CTATATGGGACCGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1760.10400354557541734No Hit
GCGTCAGGGCAGAGAAAGTAGAAGAGTGACAATAAATTTAAATCTTTGATTT1760.10400354557541734No Hit
TCATTAGGGGTAGTTCCCCTTGAAGAGATACCTCACATCCCTTGTTAGCTGT1750.1034126163391934No Hit
TCATAAGGGTGATGAGACAATATAATAATATGAAAAAGACTGGTATTTGTTG1750.1034126163391934No Hit
TCCTCAGGGATCTGAGTAGCAGAATCCTGTTTTGCTTCATCAATCTGAAGGT1750.1034126163391934No Hit
ATTTTTGGGGAACAAATTCAGAGGATCTTAGGTGCTGGCTTGTGGAGACAAA1750.1034126163391934No Hit
TTTAGTGGGATTCCATGAGAACTTCTGATAGAGAAAGAGTTGTGCCACTTAG1740.1028216871029694No Hit
GATTTAGGGCAATTAATGTTATGTTGAGAATATCAAGGCACATTTGTGGAAT1730.10223075786674546No Hit
TAGCAGGGGGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1730.10223075786674546No Hit
GTGTGCGGGGCCTTTCGCTGCTGCGGCCGCAGCCATGAGTATGCTCAGGCTT1730.10223075786674546No Hit
TTTGATGGGTCTTTGGTGAATTTCAGATGCATGTGCCATAGAAACTGTGAAG1710.10104889939429754No Hit
ACTGTGGGGATTATTGTGTCTTTGTCAAACAACAAAAACTTGAACTTAGCCC1700.10045797015807358No Hit
CGAACAGGGAAGCCATTTAAATATAGGCAATTTATATCATGCTAGCATCCAC1700.10045797015807358No Hit
CGCATCGGGTCTTGTTTCAGTGCACACGCTTGTGATAACAGTGTTAAATATG1700.10045797015807358No Hit
AAGTTTGGGTGCAAATGGAATTTTTAATGTATTTATTTGCATAAAATATGCT1700.10045797015807358No Hit
ACATTAGGGAAGAAGAAACGTTTCCTAACAAAATAAAACAGTTTATTGAAAA1700.10045797015807358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)