FastQCFastQC Report
Sat 31 Dec 2022
SRR5843935.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843935.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86696
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT4550.5248223678139706No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC3430.3956353234289933No Hit
GAACAAGGGCTCCAGGGGCAGCTTTGAGCAGAAGCTGAACTGGGCCTTCAAT1290.14879579219341146No Hit
CGCTAGGGTGGACTAAATGCTCCAATTAAAAGACACAGACTGGCAAATTGGA1260.1453354249330996No Hit
ACTTCAGGGCAGGTGCCCGCGACCCGCGTGTCCCCGTGCGCCTGGCCGCCTT1220.14072160191935038No Hit
GCAGCAGGGTAATAAAAGGTGTTCATTGACACCCCATTACTGGTGGTTGGAC1220.14072160191935038No Hit
TAAACAGGGAGAGACAGCTTTGGGTATCACCATCAAACAAGTATCTGAAGAA1190.13726123465903847No Hit
ATGAAGGGGGTGCACAAATACCTTGTTGCTATTATAACTTTGAAAAAAACAT1170.13495432315216388No Hit
GTTACAGGGAGTTCCCTAATTGTTGAATAATTAGCTGAACGTACAAATCTGA1170.13495432315216388No Hit
GCCATGGGAGATTAATGCGGAAGACAACCATCTACATGAGTGGTATGGAGAG1160.1338008673987266No Hit
TATCCTGGGGACAATAAACTGGAAAATCTAGAAGAAATGGAAAAATTCCGAG1150.1326474116452893No Hit
AAACGCGGGACGAGATGTCCCTGAATCCTTCACCTCAGAAGCTTACCAGTGG1120.12918704438497738No Hit
TTAGGGGGTTGAACTCCTGGGATCAAGCGACCCTCCTCCCTTGGCCTCCCAA1110.1280335886315401No Hit
ATGAAAGGGGAGTGAAGTAACTTCCACACTGTCAAGAGTTGACAGCATATTA1110.1280335886315401No Hit
TAAGCTGGGAAGTTGAATCAACATATGTTCTTTCATAGATGTTAAAAGGTTA1110.1280335886315401No Hit
TCAAGCAGGGTCCACATTTTTGAAAGGATTTAGTATGAATTTTCTAATTTTA1100.1268801328781028No Hit
GCTTGAGGGAAGCCCTTTTCAAAAGTTTTTGAATTTATAGAAAGCACCAATG1100.1268801328781028No Hit
TAGCAGGGGTGCCAATTATATGTCTGGGTTTCTCTCCTTATTAGCTACAGGC1100.1268801328781028No Hit
GGTTGCGGGAAGATAGATTTGTCTGGGGAAGAAGAATCACAATGCCACCAAT1100.1268801328781028No Hit
ACCTCAGGGAAACAGAAGAAATCATTTTTTTGCTATGTAATACCTCGCAACT1100.1268801328781028No Hit
CATTTCGGGTGCAGGTAATTTTTTGTCTGCTAGTAGTGTTCTAGATTATGTC1090.1257266771246655No Hit
GTAGGAGGGGAGACCACTGATTGTACTATAGAAATGATTTCTTGTAGGGATG1090.1257266771246655No Hit
TTAAGCAGGGAGGCTGGCTCTGTGGGACACTGTCAACAATGGGCCAGCCCGG1090.1257266771246655No Hit
AAGCTTGGGGTGGTTAAATGTTGCTTTTCTTTGTTTTGTGAATGTTCTAGCT1090.1257266771246655No Hit
TGAAATGGGAGGAGCTACTGAGGGAAATCAGTGTCATTATTTAAAGTCACGC1080.12457322137122821No Hit
GTTCATGGGCAAATCTATTTTTCTCACGTGTTTAAAAAACTGAAAAGTGACT1080.12457322137122821No Hit
CTTTCTCAGGGTACCGTGGCACACTTTCTGGTCACTTTGTACAATGTAGATT1080.12457322137122821No Hit
GATACAGGGGGAAACAGAAGTTCTGGGAGAAAACCCATGCAGACAGCAGGAG1070.12341976561779089No Hit
TCCTATGGGTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGC1060.12226630986435359No Hit
TTCAGCGGGGCAGACTGCTGCGGTTCCTGGGTGGCGGCGGCATGGAGGCGCG1060.12226630986435359No Hit
TCTAGAGGGACAACCAGTCTTTTTAAAGGGCAAAAATGACTCAACACCTTTG1050.1211128541109163No Hit
AGAGAGGGGAAGAAACAAGTTTATAATCAAGATGTTTGCAATCTGAAAATTC1050.1211128541109163No Hit
AAATCGGGAGGCGTGAACCACTGCGCCCGGCCAGCATGCATTTTAAAAGTGG1040.11995939835747901No Hit
TCTAATGGGAGTCTAATGCTCAGTTAGCGTTAATACTGAGAGAAGTATTTCG1040.11995939835747901No Hit
TAACCGGGTGTCAGATAACATAGCAAATAATGGAACATATCATCCTTGATAT1040.11995939835747901No Hit
GTATGAGGGATGGAAAAGTACAAAAGAAGTAACTCAAGAAGAAATTAAAAAT1030.11880594260404172No Hit
TGGCGATGGGGAATTCTGAGCTTCTTTCCTACTCTGAACTTTGAATACTACT1030.11880594260404172No Hit
ATTGCAGGGCGATCTTATCTAGGGACCTATGATACATCTGACCTGGCTGCTA1020.11765248685060442No Hit
TACTGCGGGCAGGCATCCCAAGCTTCTTTTTTTCTGGTTTCCATTAACATTC1020.11765248685060442No Hit
TCAAAAGGGATCCGAAAGAAACAGAAAGAAAGAAAGAAAAGAAAGAAAGAAA1020.11765248685060442No Hit
TGCATAGGGGGCAGAGAGAAGTGGTCAAAATCTGGATATATTTTGGAGGTTT1020.11765248685060442No Hit
GTAATAGGGCAACTTGGGATGTGTAATTGGCATCAGAAATGGCAGGTAGTCT1020.11765248685060442No Hit
TCTACTGGGAAGGCCGTTTGTGGTCTACTGTCAGTACAAAGAGCCTCTGTTG1020.11765248685060442No Hit
GATAATGGGTCTGGCTTGTTAGATCTTCTCATTTGGCGTCCTTTCTCCGAAG1010.1164990310971671No Hit
CCATCTGGGAAGTGAGAAGCGCCTCTGCCCGGCCATCTCATCTGGGAGGTGT1010.1164990310971671No Hit
GTGGTTGGGACTCGAAAAGAACAAAGGAGCTCTTTGTGCATCAGGTTCTCAA1010.1164990310971671No Hit
TTTTGTGGGAAGACTCGTCATGAAGAATTTAAAAAATATGAAATGATGAAGG1010.1164990310971671No Hit
AGCTGCGGGAAGAGTCAGTTGAAAGAAAGACAAGAGAGTCACATCTTAGCTT1010.1164990310971671No Hit
TCTTTGGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1010.1164990310971671No Hit
AACCATGGGACTCAACATCATACAGATGTCAGCTCTTCTCAAGTTAACATGT1000.1153455753437298No Hit
CATTTCGGGTACGAGGCTGCTGTTATTTGTATATGATTCTTAAAAATCAAGC1000.1153455753437298No Hit
GAGGCAGGAGAATGGCATGAACCTGAGAGGCGGAGCTTGCAGTGAGCCGAGA1000.1153455753437298No Hit
TCGTTGAGGGATGTTTTAGTTCTAAGGAAGCACCACTCAGTACAATGAAACA1000.1153455753437298No Hit
CGTTAAGGGATTATCACTTCTTCATATCCGATAATATTAAAGTTCCACAGAA990.11419211959029252No Hit
ACATCCGGGCCGATCTAAGGCAGGGGAAAGCAAACAACAGACAATCCAAAGA990.11419211959029252No Hit
GAGCAAGGGGTTGTCACTTAAGTTGCCACCTCTGCATAAGAGCTCTCTGATC990.11419211959029252No Hit
AGTACAGGGAAGGTGAACCAAAAGATCTATGACAACATGTGAGAAAGTGGCA990.11419211959029252No Hit
AGCTCAGGGCGCTCTTCCGATCTAGGTGTGGGACTTGTTTATTTGAACTAAG990.11419211959029252No Hit
TAACCAGGTAATGAAATGAGATGAAATAATGAAATGATGAAATAATGAAATG980.11303866383685522No Hit
TAGCTTGGGTCCGATCTAGACGAGGGCAACCAACAAGTCATTATTACCCTCA970.11188520808341793No Hit
ACATTTGGGGCACTTGGCTAGGAATAATAATATTTTAAAACAACAACAACAA970.11188520808341793No Hit
ACGTTGGGGGGAGGCCCTGGGACCGCGGAAGAGGCTTCAGACGCTGCAGCGA970.11188520808341793No Hit
GAGTGGGCCAACAATGGCAACTGTGTTGTCATAAGACCAAAAAATCTTCAAT960.11073175232998063No Hit
GTGGCCGGGAACCCAATGAAGGGAAGCTAAGAACCTTGATAAAAGGTTACAG960.11073175232998063No Hit
GTCAGGGGACTTAAGAGTAGAACTTACACTTATTTTTTACCATTATCTTCTC960.11073175232998063No Hit
CCTGCATGGGAACAGAGAAGTAGAAGTAGTGAAAATGGTAATATGGGATTAA960.11073175232998063No Hit
ATCACTGGGTACAGGAGTTAAAGTACATAAATGCCTTTTTACAGCTTAATCA960.11073175232998063No Hit
TAACATGGGGTTAATGAAACTGTAAAATGAGATTAATAATAATACTTGGTTC950.10957829657654333No Hit
CTACACAGGGTGGGATTGCAGGAACATGCCACCACTCCTGGCTGATTTTTGT950.10957829657654333No Hit
GACCAAGGGCACCTCGTTTTATTAGTATGTTTTTAAAGAAGTTTTTCAAGTC950.10957829657654333No Hit
CTTTGAAGGGATTTCTCTATAGTTATTTTAAAATAGTAATCAATGCTATGTA950.10957829657654333No Hit
TCATCAGGGGTTTTCTAAGAGCCCTCAATTGCCTGCCTGTATTAATTTTAGT950.10957829657654333No Hit
AAACATGGGAACATTAAAGAAGTCAGCAGAGTTCCCAGGTACAGACTGACTA950.10957829657654333No Hit
TTTCAAGGGTAACCAAGGTTTCAGGTATCCTCCTGTCACCACCTCTACTATT940.10842484082310602No Hit
ATCGTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC940.10842484082310602No Hit
CAGAGGGGAAATATTTAAATGTAAGACCTCAATTATAAAAGTCCTAGAAGAA940.10842484082310602No Hit
GGGCCCGGCCGGATCACGTGGGATGAGCTCGCTGCATCGGGGCTGCCGAGCT940.10842484082310602No Hit
CCAGATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC940.10842484082310602No Hit
GGTACAGGGACTTTTCCTGTGAATGTGCTAACCACTTTTATTGGCATTTAAA940.10842484082310602No Hit
TACTCAGGGCCGATCTATGAAAGGGTGCAGGCTTTTCTGAATACCAAATCTG930.10727138506966873No Hit
AACAGGGGCTTTTAAAATATTACTTAAGAGAATCTCAAGCTGCTAAGGATCT930.10727138506966873No Hit
ACTTTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA930.10727138506966873No Hit
GTTGTTGGGGACTCATCCAAATCTCTCTAAAACTTTCCAATGAAATCAGCCA920.10611792931623143No Hit
CTCACATAGGGTGTAGTCAAAAGTATGACTTGAGAGTGTTGCTCTGGTATTC920.10611792931623143No Hit
CTTACAGAGGGGACCAGCACCATGGCGGTTGGCAAGAACAAGCGCCTTACGA920.10611792931623143No Hit
AATCTGGGGCAAGAAATAGGTTATAGGTAAAATCTCTGAAGGATCATCTATG910.10496447356279413No Hit
TTATGGCGGGGGTTGAACTATGAACACTGTCATCAATGTTCAGTTCAAAAGC910.10496447356279413No Hit
GCAAACCCCAATGCTTTGGATGGCAACAGAGATACCCCACTTCACTGGGCAG910.10496447356279413No Hit
GACATTGGGATAGAACGTGTTATGAAGAAATGTTGAAAGAAGGCTACAGATG910.10496447356279413No Hit
GCGCTGGGAAGGTATTTGTTGCAACTTACTACATAGCATATACCCAAAATCA910.10496447356279413No Hit
ACAAATGGGACAATAAAACAATGCTATTTATCTATCAGAATGTCTTAAACTG910.10496447356279413No Hit
CTCATTGGGGCCTGATGTTAACTTACATCCCTTGAACATTCTCAGCTAGACT910.10496447356279413No Hit
ATTTATGGAATCAAATGTGATCATAAGATCATCATCTTTGAAAGATTCGTTT910.10496447356279413No Hit
AGAATAGGGTCCAAAAGAAATGAAATCACTATATCCAACAGATTTTTGCCCG910.10496447356279413No Hit
CTATCTAGGGAAGAGTTGTTTTTAAGTGTGATTTTAACATAAATTCCTCTTG900.10381101780935684No Hit
GTGACTGGGACTTGTTGGAGGAAAGAATTCCAATAATTCCTCTTTTTCCTTC900.10381101780935684No Hit
TCACTGTGGGGGTTGGGAATTTGCCTGGTCAGATAATGTGAATTCTAGAGTC900.10381101780935684No Hit
GCAGAGGGTGTTTTAATTATCTGGAAGAAAAGTAAAGTGAGTGATGAGATTA900.10381101780935684No Hit
AGCCTGGGCAACAGAGTAAGACAAAAAAAATATATATATATTGAAAATCAAA900.10381101780935684No Hit
TTTCAAGGGGCCATTTTTTGTGTTTTTAAATTATTTTCTTTATCTTGTTACA900.10381101780935684No Hit
TCTATGGGGATGAATAAGAAAGTGAAACAGCTTTATTGCTGCTAGGGAGAAA900.10381101780935684No Hit
TCAATTGGGATGGTTAGTAATGAGTTTTTAAATATTGGTCTTTATTATATAA890.10265756205591954No Hit
AGCGATGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTA890.10265756205591954No Hit
ATGGCTGGGACTCCAAGTCTCCTAATTTATTCATGCGGAGATGCATCTGCTA890.10265756205591954No Hit
TTTTATGGGATATAAATTACACCAGAGCTTCATATTAATGATACTAACTGGC890.10265756205591954No Hit
CACAGCGGGGCAACCAGGGAATTTAATTATTGCAGAAACAAGTTTAATAAGG890.10265756205591954No Hit
GGCGCAGGGAGCATAAGTTAGCAATCGGTTCTTCCAAACTCCTGTGGGTTGA890.10265756205591954No Hit
CAAACAGGGTGGAAGGCCAAGGCGGGCGGATCACAAGGTCAGGAGATTGAGA890.10265756205591954No Hit
TCAACGGGGTTATGTTTGAGAGTTGAAGCCTACTGCCAGGGTCTCACAGTGA890.10265756205591954No Hit
CTACTTGGGGAAGCTACAGATTGTCATAGTTGTTTTCCTGCTTTACAAAATT890.10265756205591954No Hit
TGAACTGGGAGCAGCTCCAGATGTCCTTATGGCATAAGAAATGGAAAAGTGC890.10265756205591954No Hit
GAATTCGGGTACAGCAAACATTATTGATAGCTGTGACTCTACTTTTGTTGTG890.10265756205591954No Hit
AGTTCTGGGACAGCTATTTTAAACTAAGCATGAGAGAGAACCCCTGACCCCA890.10265756205591954No Hit
AACGACGGGGATTTTAGAAGCCATTATTTCTTATCCATTCTGATCTTGTTGT880.10150410630248223No Hit
TAAGTCGGGAGCTACTTCTCAATTGAGTAAAGGGATGAGGCAAAGCCAATAG880.10150410630248223No Hit
GATGCAGGGTGCTGACAAGTTGGATGTGGGGTGTGAAAGAAAAATAGGGACT880.10150410630248223No Hit
TCAAATGGGGCATTCATCCCCCAAGGCATAACCCCCATTTCTAGGCATCTAA880.10150410630248223No Hit
AGCGCTGGGGAAGACAGTTTGGATGTTTCCTACAAAACTAAACACTTTTACC880.10150410630248223No Hit
ATAGTTCGGGACCTTAGGAAAGAATGTTTACTGAATGTTTATTTTATTTTTT880.10150410630248223No Hit
ATCTTAGGGGGATGCAGCAAACCACCATGGCAAGTGTATATGTATGTAACAA880.10150410630248223No Hit
GCTTACGGGAGGAATGAGAGGCAAAAATTCTAAAGATTTGGGTTATATTTTC880.10150410630248223No Hit
TGTGCAGGGCACCGACATAGTCATTATGCCGAAGAGAAAGTCTCCAGAGAAT880.10150410630248223No Hit
CATATTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA880.10150410630248223No Hit
AACTGTGGGGCTCTGTCAGTCGCGAGCGAACGACCAAGAGGGTGTTCGACTG880.10150410630248223No Hit
GCATAGGGGAACTTTTAAATTGGAAATTATCTAGATACTTAATATCAATTAA870.10035065054904493No Hit
ATCTTAGGGAGCAGGATCATGGTTATCATGGAGTCTGTGCAGTCAGAATTTT870.10035065054904493No Hit
GTTCGAGGGTACTACAACAGCCTTCTCTTTCTATTTATTGTGTCGACTCGTG870.10035065054904493No Hit
TTGCTCGGGACCTACCGCTTAAAGATTCCTTTCATAATATTACTGCTCATTG870.10035065054904493No Hit
ACTGATGGGACCTTCATTTAAGAGGCAGAAGATTAAGATAAGAAATATAAGA870.10035065054904493No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGCCG870.10035065054904493No Hit
CTCTACGGGATTATAGATAAATTAATCATTGTTGATTTTATCTGTCACATGT870.10035065054904493No Hit
GTTATAGGGACAGTCCCTTGTTCAACAGAGAGCTTTTGCTGGGAAGACGGCA870.10035065054904493No Hit
GCTTAAGGGGGGACTATAAGCACGCACCACTATGTCTGGCTAATTTTTGTAT870.10035065054904493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)