FastQCFastQC Report
Sat 31 Dec 2022
SRR5843908.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843908.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94794
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT6890.7268392514294153No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC6310.6656539443424689No Hit
CATGTTGGAGCTCACAGTTTTGCTACAGAAAATATTATTGGGGGATCTGAAC1310.13819440048948245No Hit
GTACAAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1260.1329198050509526No Hit
GATACAGGGGCAAACCAAAAAGGAATATGTAGTTTCAGGTGAACACAAACAG1250.13186488596324664No Hit
ACAAGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1230.12975504778783467No Hit
GGTACCGGGCACTGTGGTGCATGCCCCTTATCCTCAGCCTCCAAGTGTGCCG1210.12764520961242273No Hit
CTACTTGGGGGCCCTTGAAAGTTCTTGGATCTGCGGGTTATGGCCGGTCCCT1210.12764520961242273No Hit
CATGCGGGGATAGTGTTTTAGTGATGACTGAGAAAATAGGTTGAGTTTTTTT1190.1255353714370108No Hit
TTACGCGGGTTGGCTTATGAACCACAAGCACACAGGGAGGGGTGCGGATGGG1180.12448045234930481No Hit
TTCAGCGGGACTGACATTGATGCCTGGGGGACCTTTTGCCTCGAGGCTGAGC1180.12448045234930481No Hit
TTTGGGCGGGAGAGCTTCTTTGAAGCCAAGAAGCTTGTGTAGCTGTCCCAGG1170.12342553326159884No Hit
GCAAATGGGCTTGCAGCGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGC1160.12237061417389287No Hit
TCTAGCGGGGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG1160.12237061417389287No Hit
TGACTTGGGAGCCTCATTCAGCATGGGTCCTTGATGCCAGAGGGCCAGCAGG1130.11920585691077494No Hit
CATACTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1120.11815093782306897No Hit
TTTTGCGGGCTGACAGCGGGTGTTAGTATAAGTAACATGAAAACATTCTCCT1120.11815093782306897No Hit
GATCTTGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1120.11815093782306897No Hit
CACAAGGGAGTCACAGACAGGAGACGGGGACAGGAAAGAACTCATTCCACCC1100.11604109964765702No Hit
CAAGAGGGGGAAGTGCTCCAAATTTGAGAATCATTGCTCTAGTAGATCTCTA1100.11604109964765702No Hit
ATGTGTGGGTGTATTATAAATTTCAAATATTTAAAAAGAAAACCATAAAAGT1090.11498618055995105No Hit
TCATGAGGGAAGCCTGAAAATGCAGGGGAAAAACAATGATATATTTCAGTAT1070.11287634238453911No Hit
TAGCTCGGGGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTA1070.11287634238453911No Hit
AGATTTGGGGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCT1060.11182142329683312No Hit
AATGTAGGGGGTTCAGGGGAGGTCCGAGCTGCAGATGTCAATTTGGTTTTCG1060.11182142329683312No Hit
TCATGAGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGAGAGACGCAGCGGA1050.11076650420912715No Hit
GACTATGGGCACTTTTCTAGCCAAAGGAAGACCAGTAGGAAAGCAAACCCTT1050.11076650420912715No Hit
GTAAACGGGGGGGGTGGGGCTGGGACCGGGTGGCTTTATATTGATAATGAAA1040.10971158512142118No Hit
TACGCGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1040.10971158512142118No Hit
GTTTAAGGGGAGTCAGCGATTTGGGTCTCGGAGCACCAAGGAGACGGTGGAC1040.10971158512142118No Hit
TCACGCGGGAAATGTGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCT1040.10971158512142118No Hit
ACATAGGGAGGCGAGGGCGATCTGATAGGGGATGAAAGGAAGACTTTGTTGG1030.10865666603371521No Hit
CTTCCGGGAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAGC1030.10865666603371521No Hit
CCTGCCGGGGCAGTAGTGGAAAAACAAGATACAGCCACATAGACAGCAGTAT1020.10760174694600924No Hit
TTCGCCGGGCTTGGTCATCTCGACTAATTCTGAGGCAATGATGGACAGAGAT1020.10760174694600924No Hit
TAACAAGGGACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTC1020.10760174694600924No Hit
ACACACGGGCGATCTAACGCCGGGCGACGTGGCGGCCGCGGAGAACGAGGTC1010.10654682785830327No Hit
GATTTCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1010.10654682785830327No Hit
TAACTCGGGATGCCAATTTTATTCCTAAGGAATTTGTTGGTCAAATAATGAC1010.10654682785830327No Hit
GCAAATGGGCTACTGCCCTGAGCCTGAACGCTTCTGCTTAATCTGAGAATCA1010.10654682785830327No Hit
TCTTGCGGGTTAAACATTTAGTTACACTGGATTACTCTTCCAAAGCTGACCT1000.1054919087705973No Hit
TGCATGGGGCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTG1000.1054919087705973No Hit
TGTTAAGGGCATTCTCTCCAGTGTATTTTTTTACCTCACACATCAGTTATCT1000.1054919087705973No Hit
GCTCCTGGGCCATTCCATTTTTTCTTAAAGATTGCCCTAAATCTATAGATGC1000.1054919087705973No Hit
GATACAGGGGACTGTTTAAAAACTGAAAACAGCGAGGAGTCTTTCTAGAACT1000.1054919087705973No Hit
TGGACTAGGGACTCTCTGCCAGTGCAAGAATGGCCACATCTGTTGCTCAGTG1000.1054919087705973No Hit
GGGTCCGGGATTGTGCCATTTTGTCATAGAATGTAAAAATTGGTTAACTTTA990.10443698968289133No Hit
TACATAGGGTAACTTTTATTCATTGGAATCAAAACGATGGTTGGTACTGTGT990.10443698968289133No Hit
AGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATT990.10443698968289133No Hit
AAGCCGGGGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTA990.10443698968289133No Hit
GAGCACGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG980.10338207059518535No Hit
TTCAGCGGGCAAGGACATGTTGCATGCCTGAAACTGAGTATACAGGAAAAGG980.10338207059518535No Hit
GCCATGCGGGATCAGTTAGAAGAAAAAGAAAATCAAATTAAGAGCATGAAGG980.10338207059518535No Hit
ATCTCTGGGTAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCA980.10338207059518535No Hit
TTTGGTGGGTGAAAGGACTAGACTTGGTCTTTAAGCTCCCTTCCGATTCTAA970.10232715150747937No Hit
CTGGCAGGGACTGCAGGAGGATTTGTCTCTAAGAGGTGCTGCCCCAAAGCTC970.10232715150747937No Hit
AACACTGGGCACCAGGGAGAATAAGAGCCGGCAGATCCGGCAGTTCCACTTC970.10232715150747937No Hit
TGCTGAGGGCACCAACTCTTTGTATAAATTATTCTTTCAATCTTTGAAATGG970.10232715150747937No Hit
GTAAGCGGGCAGGGAGTGTTTAGAGATTGAATTACCCCAGTAAAGTAGTCTC970.10232715150747937No Hit
CTTTTCGGGAAACAATGAATGTCTTTTTTCAAACTTTATTGACAAGTGATTT960.1012722324197734No Hit
AAGCACGGGGGACATGGTGGCCGAGACCGGCGGGGTGGGGGACGTGTCGCGC960.1012722324197734No Hit
AATTTGGGGATAATGTCTGAAGCATATTGAGTATGGAGAGCATGATAAATGA960.1012722324197734No Hit
AAGCTTGGGGCCAAAGCTGCTGTACCAATCAGCACTTTGGAATCTGATAATA950.10021731333206743No Hit
GCTGCAGGGAGAAGAAGCCTGCTTCACTCTCCAGTACCTAAACAAATTGTCC950.10021731333206743No Hit
TCGAAGAGGGGTTCATGGATGGGAAGAATTAATATTGTTAAAATGTCCATAC950.10021731333206743No Hit
GCGTGCGGGGAATCACTAGCCTTAGGTCTTTCAGCAAACAGCCTATCAGGGC950.10021731333206743No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)