FastQCFastQC Report
Sat 31 Dec 2022
SRR5843907.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843907.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94402
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT6880.7287981186839262No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC6530.6917226329950636No Hit
GTAAACGGGGGGGGTGGGGCTGGGACCGGGTGGCTTTATATTGATAATGAAA1390.14724264316433974No Hit
GCTGGCGGGGAATAAATGAAAAATAGAGAGACATACCTGGCTCCAAAACAAG1320.13982754602656725No Hit
CATGCGGGGATAGTGTTTTAGTGATGACTGAGAAAATAGGTTGAGTTTTTTT1220.12923455011546364No Hit
AACCAAGGGGAAGCAAAATAAGACATGTGAAGAATCATGTCAAAGGTAAGAA1210.1281752505243533No Hit
TCTAGCGGGGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG1200.12711595093324293No Hit
ACACACGGGCGATCTAACGCCGGGCGACGTGGCGGCCGCGGAGAACGAGGTC1180.12499735175102224No Hit
GATACAGGGGCAAACCAAAAAGGAATATGTAGTTTCAGGTGAACACAAACAG1180.12499735175102224No Hit
GCCATGCGGGATCAGTTAGAAGAAAAAGAAAATCAAATTAAGAGCATGAAGG1150.12181945297769115No Hit
GCAAATGGGCTACTGCCCTGAGCCTGAACGCTTCTGCTTAATCTGAGAATCA1140.12076015338658079No Hit
ATGTGTGGGTGTATTATAAATTTCAAATATTTAAAAAGAAAACCATAAAAGT1130.11970085379547042No Hit
GAATTAGGGTGTGAGAAGCCGTATCCGCTTCACAGGTAACTAATGCAGCGGT1130.11970085379547042No Hit
CTTCCGGGAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAGC1120.11864155420436007No Hit
CATACTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1110.11758225461324973No Hit
GGTACCGGGCACTGTGGTGCATGCCCCTTATCCTCAGCCTCCAAGTGTGCCG1110.11758225461324973No Hit
CATGTTGGAGCTCACAGTTTTGCTACAGAAAATATTATTGGGGGATCTGAAC1110.11758225461324973No Hit
TTTGGGCGGGAGAGCTTCTTTGAAGCCAAGAAGCTTGTGTAGCTGTCCCAGG1100.11652295502213937No Hit
TTTGCCGGGCAGAGTGTGGCTTAACACAAAGCACCCAACTTACACTTAGGAG1100.11652295502213937No Hit
TTCAGCGGGACTGACATTGATGCCTGGGGGACCTTTTGCCTCGAGGCTGAGC1100.11652295502213937No Hit
TCATAAGGGGCACACTGCTTTGTGTTTTTGGTTTACCCTAAACTACCATCCT1090.115463655431029No Hit
GTTTAAGGGGAGTCAGCGATTTGGGTCTCGGAGCACCAAGGAGACGGTGGAC1090.115463655431029No Hit
GGGTCCGGGATTGTGCCATTTTGTCATAGAATGTAAAAATTGGTTAACTTTA1080.11440435583991865No Hit
GACGCAGGGTGCTCACTTTCACTTGCATTTAAAAATCAGAGCTCTAAAAGTT1080.11440435583991865No Hit
CACTGGGGGGCGCGCGCAGTGGCAGGGCCAGTGAGCTGCACCCGCGGAAAAG1060.11228575665769792No Hit
TTGTGCGGGGGGACTCCAATTAGAATGGGGTTGAGATTGTGGCATTCAGTTT1060.11228575665769792No Hit
ATCTCTGGGTAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCA1050.11122645706658757No Hit
TTCGCCGGGCTTGGTCATCTCGACTAATTCTGAGGCAATGATGGACAGAGAT1050.11122645706658757No Hit
TGGACTAGGGACTCTCTGCCAGTGCAAGAATGGCCACATCTGTTGCTCAGTG1050.11122645706658757No Hit
TGAGGGGGGAATCTCCAACTAGCCTCCAGACAAAACATACTCAAATTCAAAC1040.11016715747547723No Hit
TATGGCGGCTTTTCCTAACACTCACAACAAAACTAACTAATACTAACATCTC1040.11016715747547723No Hit
TTACGCGGGTTGGCTTATGAACCACAAGCACACAGGGAGGGGTGCGGATGGG1040.11016715747547723No Hit
TTCGACGGGGGGAATAACATTAGGAGAAATACCTAATGTAGATGATGGGTTG1040.11016715747547723No Hit
AAGCCGGGGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTA1040.11016715747547723No Hit
ACAAGCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1030.10910785788436686No Hit
GTTATAGGGACGACAGAGGTGTGAATAAAAGCATCAGGAAATCGGATGGAGA1020.1080485582932565No Hit
TACCAGGGGCGGGGGTAGGAGGATCTGCAGTTGTTCAGCCGTCTTTCTGCTG1020.1080485582932565No Hit
TCACGCGGGAAATGTGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCT1020.1080485582932565No Hit
GCAAATGGGCTTGCAGCGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGC1010.10698925870214614No Hit
GATCTTGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1010.10698925870214614No Hit
TATCGCCGGGAACCATGATAGGTAGAGGACTTTTCTTTTGGTTTTGTTTTGT1010.10698925870214614No Hit
GCTGCAGGGAGAAGAAGCCTGCTTCACTCTCCAGTACCTAAACAAATTGTCC1000.10592995911103578No Hit
TTTTGCGGGCTGACAGCGGGTGTTAGTATAAGTAACATGAAAACATTCTCCT1000.10592995911103578No Hit
TAGCTCGGGGGCGCATGAGCTGGAGTCCTAGGCACAGCTCTAAGCCTCCTTA1000.10592995911103578No Hit
GATACAGGGGACTGTTTAAAAACTGAAAACAGCGAGGAGTCTTTCTAGAACT1000.10592995911103578No Hit
TGTTAAGGGCATTCTCTCCAGTGTATTTTTTTACCTCACACATCAGTTATCT990.10487065951992541No Hit
TCATGAGGGAAGCCTGAAAATGCAGGGGAAAAACAATGATATATTTCAGTAT990.10487065951992541No Hit
TATACAGGGATGGAATTGTTAATTTTCTGACACGTCTAGATGTGAAATTTCT990.10487065951992541No Hit
TTGCAGTGGGCGATCTGGCGTGGGGATGGCACATGCAGCGCAAGTAGGTCTA990.10487065951992541No Hit
GTACAAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA990.10487065951992541No Hit
CATAAAGGGCATCTCTGACCTCTGAATTGAGGTATTAAGTAGACAAAAAATC980.10381135992881506No Hit
AATTATGGGGCATAGGCAAAGAATTCATGACTAAGACACCAAAAGCAAACAC980.10381135992881506No Hit
CAACTGGGACCTCTAGCCTAGCCGTTTACTCAATCCTCTGATCAGGGTGAGC980.10381135992881506No Hit
CAAGAGGGGGAAGTGCTCCAAATTTGAGAATCATTGCTCTAGTAGATCTCTA980.10381135992881506No Hit
GTAGGTGGGATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGT980.10381135992881506No Hit
TGAAAGAGGGGTTCAAGTGGAATGAAAATAAGGAGAATAAAATTTTTTTTAA980.10381135992881506No Hit
CACAAGGGAGTCACAGACAGGAGACGGGGACAGGAAAGAACTCATTCCACCC970.10275206033770472No Hit
GTGATAGGGAAATGACAAATTGTTTCTTCATAATGATCTTCCATTTTTAACA970.10275206033770472No Hit
ATCGTGGGCTCTCCATCTCTATAGATTTGCCCATGCTAGACATTTCATATAA960.10169276074659436No Hit
TTTGGAGGGAGTATCAGTCTTTTTAACTTTAACCGTTCTAGTAAGTGTGTAG960.10169276074659436No Hit
ATACAAGGGCAGTGGCATATCCAGGCATGCTGTGCTCTAACTGGCGAGGGAT960.10169276074659436No Hit
CTTTAGCGGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGG960.10169276074659436No Hit
GCATTTGGGTTTAGAAGGCAGCAGTGAAATAGATTATTGTCAATGTATTACA960.10169276074659436No Hit
ATACGTGGGATCTGCATACAGTTGTCCCTTGGTATCCATGGGGAACGATTTC960.10169276074659436No Hit
GTGCACGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC960.10169276074659436No Hit
AGTTAAGGGAACAAGTCGATGAACTATTCCCCAGCAGGGTCTTTTCATCTGG950.100633461155484No Hit
CATTTAGGGGAATGGTACTGAAAATGGTTCAGGCACAGTGGTTGAATTGAAT950.100633461155484No Hit
AAATCCGGGACTTCCTCCGGCGTTTCCTCCTTCAAATGCATCCCCTTCACAG950.100633461155484No Hit
ATCGCAGGGTTACTGAGGGGCCCCAAGTTCTCCATGATGTGTTACTCCCTTG950.100633461155484No Hit
TAACAAGGGACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTC950.100633461155484No Hit
AACCACGGGGATTGTTGGATGGAGCACTTAAACTTTCAGCTAAGGATCTTAG950.100633461155484No Hit
TGACTTGGGAGCCTCATTCAGCATGGGTCCTTGATGCCAGAGGGCCAGCAGG950.100633461155484No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)