FastQCFastQC Report
Sat 31 Dec 2022
SRR5843906.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5843906.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94415
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGCCGTCT6150.6513795477413546No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTGAAGGATCTCGTATGC5780.6121908595032569No Hit
CATGCGGGGATAGTGTTTTAGTGATGACTGAGAAAATAGGTTGAGTTTTTTT1370.1451040618545782No Hit
TTCAGCGGGACTGACATTGATGCCTGGGGGACCTTTTGCCTCGAGGCTGAGC1250.13239421702060053No Hit
ATGTGTGGGTGTATTATAAATTTCAAATATTTAAAAAGAAAACCATAAAAGT1250.13239421702060053No Hit
GCATTTGGGGCAGAAATAAAAGTTTACAGCTGAAAATATAACCTGCATAGAT1220.12921675581210612No Hit
GTAATAGGGAAGAGTGAATGTGGTATATTTCTAAATGATATGGAAAATAGAG1220.12921675581210612No Hit
GCTGGCGGGGAATAAATGAAAAATAGAGAGACATACCTGGCTCCAAAACAAG1200.12709844833977652No Hit
CTTCCGGGAAGCTTTTATCTTTTAACCAACTGAACAATACACCAAAAGCAGC1180.12498014086744691No Hit
TTTGGGCGGGAGAGCTTCTTTGAAGCCAAGAAGCTTGTGTAGCTGTCCCAGG1170.12392098713128209No Hit
TTCGCCGGGCTTGGTCATCTCGACTAATTCTGAGGCAATGATGGACAGAGAT1170.12392098713128209No Hit
GTTTAAGGGGAGTCAGCGATTTGGGTCTCGGAGCACCAAGGAGACGGTGGAC1170.12392098713128209No Hit
AAGCCGGGGTTTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTA1160.1228618333951173No Hit
ATTAGCGGGAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATT1150.12180267965895249No Hit
ACATAGGGAGGCGAGGGCGATCTGATAGGGGATGAAAGGAAGACTTTGTTGG1150.12180267965895249No Hit
AGCTAAGATTCTAATTTAAACTATTCTCTGTTCTTTCATGGGGAAGCAGATT1140.1207435259227877No Hit
GTAAACGGGGGGGGTGGGGCTGGGACCGGGTGGCTTTATATTGATAATGAAA1140.1207435259227877No Hit
CATACTGGGATGACCCCAATACGCAAAACTAACCCCCTAATAAAATTAATTA1130.11968437218662288No Hit
GATCTTGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1130.11968437218662288No Hit
GACGCAGGGTGCTCACTTTCACTTGCATTTAAAAATCAGAGCTCTAAAAGTT1120.11862521845045809No Hit
GACTAGGGGAGACATAAAGGATAAAAGGAAAATAACCGTCTGCCGATGGTCC1120.11862521845045809No Hit
AGTATTGGGGAGTGTACAGTACAGGATTATTATAATGAAAGTTTATATCAAC1100.11650691097812847No Hit
CAAACGGGGCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATT1100.11650691097812847No Hit
TGAGGGGGGAATCTCCAACTAGCCTCCAGACAAAACATACTCAAATTCAAAC1090.11544775724196367No Hit
TCTAGCGGGGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAG1090.11544775724196367No Hit
GATACAGGGGACTGTTTAAAAACTGAAAACAGCGAGGAGTCTTTCTAGAACT1090.11544775724196367No Hit
CCTGCCGGGGCAGTAGTGGAAAAACAAGATACAGCCACATAGACAGCAGTAT1080.11438860350579887No Hit
ATCTCTGGGTAACAACAAAGGAATTGGGAACTGTAATGAGATCTCTTGGGCA1080.11438860350579887No Hit
GGCCACGGGGAAATACCATCACACACCAGTCAGATTGGTTATTATTGAAAAG1080.11438860350579887No Hit
GCAAATGGGCTTGCAGCGGGGAGGTAGGCATTGAGGCAGCCAGCGCAGGGGC1070.11332944976963408No Hit
GATTTCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1070.11332944976963408No Hit
AACCACGGGGATTGTTGGATGGAGCACTTAAACTTTCAGCTAAGGATCTTAG1070.11332944976963408No Hit
TGAAAGAGGGGTTCAAGTGGAATGAAAATAAGGAGAATAAAATTTTTTTTAA1070.11332944976963408No Hit
TTTGCCGGGCAGAGTGTGGCTTAACACAAAGCACCCAACTTACACTTAGGAG1060.11227029603346926No Hit
GTACAAGGGGCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAA1060.11227029603346926No Hit
GAGCACGGGCTGATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAG1050.11121114229730444No Hit
TGAACTGGGGGGTCGGCCAAGGAGTGGCATTTGGAAAGAAAATCCTAGAAAG1040.11015198856113965No Hit
TTTTGCGGGCTGACAGCGGGTGTTAGTATAAGTAACATGAAAACATTCTCCT1040.11015198856113965No Hit
CATGTTGGAGCTCACAGTTTTGCTACAGAAAATATTATTGGGGGATCTGAAC1040.11015198856113965No Hit
GAACATGGGATTTCCAAACAACTCAGAGATCTTTGTCCTTCAAGGGGCAGAA1030.10909283482497484No Hit
ACCAATGGGAATGCCCCAACTAAATACTACCGTATGGCCCACCATAATTACC1020.10803368108881005No Hit
TTTGGAGGGAGTATCAGTCTTTTTAACTTTAACCGTTCTAGTAAGTGTGTAG1020.10803368108881005No Hit
GCCATGCGGGATCAGTTAGAAGAAAAAGAAAATCAAATTAAGAGCATGAAGG1020.10803368108881005No Hit
CACTAAAGGGGAATATGTTCTGATCAGTGGCTAATTTAACATGTTTTTCTCT1020.10803368108881005No Hit
CACTGGGGGGCGCGCGCAGTGGCAGGGCCAGTGAGCTGCACCCGCGGAAAAG1020.10803368108881005No Hit
ACAGTTGGGATAGCTGGGCAGAAAGCATCCAAACAAGAACTAGAGACAGAAC1020.10803368108881005No Hit
CGCCAGGGATTCCAGCGCAAGTAATTTATTAAGGAAGTACTCACAGGAAATA1010.10697452735264523No Hit
GTTATAGGGACGACAGAGGTGTGAATAAAAGCATCAGGAAATCGGATGGAGA1010.10697452735264523No Hit
TTACGCGGGTTGGCTTATGAACCACAAGCACACAGGGAGGGGTGCGGATGGG1000.10591537361648044No Hit
GATACAGGGGCAAACCAAAAAGGAATATGTAGTTTCAGGTGAACACAAACAG1000.10591537361648044No Hit
AGGAACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1000.10591537361648044No Hit
TAACAAGGGACGCCCTGATCGGCGCACTGCGAGCAGTAGCCCAAACAATCTC1000.10591537361648044No Hit
TCTTGCGGGTTAAACATTTAGTTACACTGGATTACTCTTCCAAAGCTGACCT990.10485621988031563No Hit
CTTTTCGGGAAACAATGAATGTCTTTTTTCAAACTTTATTGACAAGTGATTT990.10485621988031563No Hit
ACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTTAAC990.10485621988031563No Hit
ATCGCAGGGTTACTGAGGGGCCCCAAGTTCTCCATGATGTGTTACTCCCTTG990.10485621988031563No Hit
TTGCCAGGGATATGAGTCAGAATCTGTCTGTACTCATTCTGTACATTGTAAC990.10485621988031563No Hit
GAAGCGGGATGCCCAGGAGTCTCAAAGGGAGGAGGCCAGCTGAGTAGGCAGC990.10485621988031563No Hit
ACGGCGGGAGTCGGAGCCAGCGCGAGCCGCCGCCGCCATCACTGCCGCTGCC980.10379706614415081No Hit
GCTTACGGGCGCGGGATTGATGTGCAACAAGTGTCTTTGGTTATAAATTATG980.10379706614415081No Hit
TGACTTGGGAGCCTCATTCAGCATGGGTCCTTGATGCCAGAGGGCCAGCAGG980.10379706614415081No Hit
TGTTAAGGGCATTCTCTCCAGTGTATTTTTTTACCTCACACATCAGTTATCT970.10273791240798602No Hit
AATTATGGGGCATAGGCAAAGAATTCATGACTAAGACACCAAAAGCAAACAC970.10273791240798602No Hit
GCTCCTGGGCCATTCCATTTTTTCTTAAAGATTGCCCTAAATCTATAGATGC970.10273791240798602No Hit
TACCAGGGGCGGGGGTAGGAGGATCTGCAGTTGTTCAGCCGTCTTTCTGCTG970.10273791240798602No Hit
TCACGCGGGAAATGTGAAGGTAGAGGAGGTAAGAAAGGAGCAGTAGAGTGCT970.10273791240798602No Hit
ACACACGGGCGATCTAACGCCGGGCGACGTGGCGGCCGCGGAGAACGAGGTC960.10167875867182122No Hit
TCATGAGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGAGAGACGCAGCGGA960.10167875867182122No Hit
TTGCAGTGGGCGATCTGGCGTGGGGATGGCACATGCAGCGCAAGTAGGTCTA960.10167875867182122No Hit
GCCGCAGGGAAGGGAAATGCTGTTGGTGAGAATCGACCTCACTGTCAGCGTT950.10061960493565641No Hit
AAGCACGGGGGACATGGTGGCCGAGACCGGCGGGGTGGGGGACGTGTCGCGC950.10061960493565641No Hit
CGCAGCGGGTAGCATGATGCTTATTCCTGAAATATACTCATTACAGGCATCT950.10061960493565641No Hit
AAAAAGGGGAGCTCACAACTAGGGAAAGCACTTGTTAAAGAGAATGCCCCCA950.10061960493565641No Hit
TTATCAGGGTTCATTATTAAATCCTAAATTACTAATGACCTGATATGTTCAT950.10061960493565641No Hit
AACCAAGGGGAAGCAAAATAAGACATGTGAAGAATCATGTCAAAGGTAAGAA950.10061960493565641No Hit
GTCAGAGGGTTAGAGTTCATGGAACATAGAACAACCATGAATGAGTGGCATG950.10061960493565641No Hit
TGATACGGGAATTTCAGAAAGTCAGCACTGAAGTCCTGACCTATCAGTAGAC950.10061960493565641No Hit
GTGCCAGGGTAAAACAAAAATTGAGGCATTATATGTCACAACTGAAATGGAA950.10061960493565641No Hit
TTTTGCGGGCAAAGCAGTGCCAGCCGTCCGACACCGTGTGTGCCAGTGTCCG950.10061960493565641No Hit
CGCAAAGGGATGACTCAAGCTACCTCCTCATGCCAATAGTTGTTCAAAAGGA950.10061960493565641No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)